"""API for fetching metadata using an API""" from http.client import RemoteDisconnected from urllib.error import URLError from flask import Blueprint from flask import jsonify from flask import current_app from SPARQLWrapper import SPARQLWrapper from gn3.db.rdf import get_dataset_metadata from gn3.db.rdf import get_trait_metadata metadata = Blueprint("metadata", __name__) @metadata.route("/dataset/<name>", methods=["GET"]) def dataset_metadata(name): """Fetch a dataset's metadata given it's ACCESSION_ID""" try: return jsonify( get_dataset_metadata( SPARQLWrapper(current_app.config.get("SPARQL_ENDPOINT")), name, ).data ) # The virtuoso server is misconfigured or it isn't running at all except (RemoteDisconnected, URLError): return jsonify({}) @metadata.route("/dataset/<dataset_name>/trait/<trait_name>", methods=["GET"]) def trait_metadata(dataset_name, trait_name): """Fetch a trait's metadata given the trait_name and dataset_name'""" try: return jsonify( get_trait_metadata( SPARQLWrapper(current_app.config.get("SPARQL_ENDPOINT")), trait_name, dataset_name ).data ) # The virtuoso server is misconfigured or it isn't running at all except (RemoteDisconnected, URLError): return jsonify({})