genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Branch	Commit message	Author	Age
auth/implement-authorization-code-flow	auth: Implement "Authorization Code Flow"	Frederick Muriuki Muriithi	21 months
data-access-levels-endpoint	auth: Unlink data from resources	Frederick Muriuki Muriithi	23 months
feature/autocomplete-generation	init commit	Alexander_Kabui	22 months
feature/lmdb-rust	add lmdb rust caller function	Alexander_Kabui	20 months
gn-guile	Added comment	Pjotr Prins	18 months
luna	Running luna in container	GN3 production	2 years
main	Add rdf-tests after the check phase.	Munyoki Kilyungi	4 months
migrate-to-python3.10	Fix linting errors caused by bump to Python 3.10	Frederick Muriuki Muriithi	19 months
oauth2_auth_flow	auth: implement OAuth2 flow.	Frederick Muriuki Muriithi	2 years
rework-genotype-linking	Rework genenetwork linking	Frederick Muriuki Muriithi	20 months
[...]


Age	Commit message	Author
2023-06-21	add lmdb rust caller functionfeature/lmdb-rust	Alexander_Kabui
2023-05-15	collections: Move code to new package. Create new collections....Move the code to a new package. Enable the creation of new collection by both authenticated and anonymous users.	Frederick Muriuki Muriithi
2023-05-12	auth: Provide separate endpoint for anonymous collections.	Frederick Muriuki Muriithi
2023-05-11	auth: Fix bug with migration of user collections...The code, as written previously had a subtle bug - if the user created a new collection before they had tried accessing their list of collections, the older code would not have migrated the older collections. This commit fixes that by enabling the migration of older collections, whether or not the user has created a collection with their new accounts.	Frederick Muriuki Muriithi
2023-05-10	auth: Add the /oauth2/user/collections/list endpoint...Add an endpoint to list a user's collections. This only works for logged in users.	Frederick Muriuki Muriithi
2023-05-10	auth: Only check deliverability of emails at registration....Check only that the email format is correct, but don't bother with the deliverability check during authentication. The deliverability check is done at registration.	Frederick Muriuki Muriithi
2023-05-09	auth: Implement "Authorization Code Flow"...Implement the "Authorization Code Flow" for the authentication of users. * gn3/auth/authentication/oauth2/grants/authorisation_code_grant.py: query and save the authorisation code. * gn3/auth/authentication/oauth2/models/authorization_code.py: Implement the `AuthorisationCode` model * gn3/auth/authentication/oauth2/models/oauth2client.py: Fix typo * gn3/auth/authentication/oauth2/server.py: Register the `AuthorisationCodeGrant` grant with the server. * gn3/auth/authentication/oauth2/views.py: Implement `/authorise` endpoint * gn3/templates/base.html: New HTML Templates of authorisation UI * gn3/templates/common-macros.html: New HTML Templates of authorisation UI * gn3/templates/oauth2/authorise-user.html: New HTML Templates of authorisation UI * main.py: Allow both "code" and "token" response types. auth/implement-authorization-code-flow	Frederick Muriuki Muriithi
2023-04-27	auth: Retrieve `system:` privileges from resource roles...With the assignment of `system:` privileges to roles, we need to check for their existence when doing authorisation. This commit provides a hack for that, seeing as user groups (and the system itself) are not treated as resources, and therefore the way to fetch the privileges is not entirely consistent.	Frederick Muriuki Muriithi
2023-04-27	auth: List also the non-resource privileges the user has...While creating new group roles, enable the listing of non-resource privileges, e.g. `system:group:` and `system:user:` that the user has to allow for them to be used in role creation.	Frederick Muriuki Muriithi
2023-04-27	auth: Add authorisation checks for role editting.	Frederick Muriuki Muriithi
[...]