blob: 44f5321e6dd906209714ce7f11e97abce4bd5dec (
about) (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
|
from __future__ import absolute_import, print_function, division
from base.trait import GeneralTrait
from base import data_set
from base.species import TheSpecies
def get_species_dataset_trait(self, start_vars):
#assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
self.dataset = data_set.create_dataset(start_vars['dataset'])
print("After creating dataset")
self.species = TheSpecies(dataset=self.dataset)
print("After creating species")
self.this_trait = GeneralTrait(dataset=self.dataset,
name=start_vars['trait_id'],
cellid=None)
print("After creating trait")
#if read_genotype:
#self.dataset.group.read_genotype_file()
#self.genotype = self.dataset.group.genotype
|
