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from __future__ import absolute_import, print_function, division
from base.trait import GeneralTrait
from base import data_set
from base.species import TheSpecies
def get_species_dataset_trait(self, start_vars):
#assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
self.dataset = data_set.create_dataset(start_vars['dataset'])
self.species = TheSpecies(dataset=self.dataset)
self.this_trait = GeneralTrait(dataset=self.dataset.name,
name=start_vars['trait_id'],
cellid=None)
#if read_genotype:
self.dataset.group.read_genotype_file()
self.genotype = self.dataset.group.genotype
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