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import sys
import utilities
def get_probesetxref(probesetfreezeid):
cursor = utilities.get_cursor()
sql = """
SELECT ProbeSetXRef.`ProbeSetId`, ProbeSetXRef.`DataId`
FROM ProbeSetXRef
WHERE ProbeSetXRef.`ProbeSetFreezeId`=%s
"""
cursor.execute(sql, (probesetfreezeid))
return cursor.fetchall()
def get_probeset(probesetid):
cursor = utilities.get_cursor()
sql = """
SELECT *
FROM ProbeSet
WHERE ProbeSet.`Id`=%s
"""
cursor.execute(sql, (probesetid))
return cursor.fetchone()
def get_probesetdata(probesetdataid):
cursor = utilities.get_cursor()
sql = """
SELECT Strain.`Id`, Strain.`Name`, ProbeSetData.`value`
FROM ProbeSetData, Strain
WHERE ProbeSetData.`Id`=%s
AND ProbeSetData.`StrainId`=Strain.`Id`;
"""
cursor.execute(sql, (probesetdataid))
return cursor.fetchall()
def get_probesetxref_probesetfreezeid(locus, probesetfreezeid):
cursor = utilities.get_cursor()
sql = """
SELECT ProbeSetXRef.`ProbeSetId`
FROM ProbeSetXRef
WHERE ProbeSetXRef.`ProbeSetFreezeId`=%s
AND ProbeSetXRef.`Locus` LIKE %s
"""
cursor.execute(sql, (probesetfreezeid, locus))
return cursor.fetchall()
def get_probesetxref_inbredsetid(locus, inbredsetid):
cursor = utilities.get_cursor()
sql = """
SELECT ProbeSetXRef.`ProbeSetId`
FROM (ProbeSetXRef, ProbeSetFreeze, ProbeFreeze)
WHERE ProbeSetXRef.`ProbeSetFreezeId`=ProbeSetFreeze.`Id`
AND ProbeSetFreeze.`ProbeFreezeId`=ProbeFreeze.`Id`
AND ProbeFreeze.`InbredSetId`=%s
AND ProbeSetXRef.`Locus` LIKE %s
"""
cursor.execute(sql, (inbredsetid, locus))
return cursor.fetchall()
print get_probesetxref_inbredsetid(locus="rs3663871", inbredsetid=1)
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