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# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
#
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License
# as published by the Free Software Foundation, either version 3 of the
# License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
# See the GNU Affero General Public License for more details.
#
# This program is available from Source Forge: at GeneNetwork Project
# (sourceforge.net/projects/genenetwork/).
#
# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
#
#
#
# This module is used by GeneNetwork project (www.genenetwork.org)
#
# Created by GeneNetwork Core Team 2010/08/10
#
# Last updated by GeneNetwork Core Team 2010/10/20
import string
from cmdClass import cmdClass
from search.TextSearchPage import TextSearchPage
#########################################
# Search Gene Symbol PAGE
#########################################
class cmdSearchGene(cmdClass):
def __init__(self,fd):
#example
cmdClass.__init__(self,fd)
self.page = None
self.text = ""
fd.geneName = fd.formdata.getvalue('gene')
fd.returnFmt = fd.formdata.getvalue('format', 'html')
if fd.geneName:
fd.geneName = string.strip(fd.geneName)
fd.refseq = fd.formdata.getvalue('refseq')
if fd.refseq:
fd.refseq = string.strip(fd.refseq)
fd.genbankid = fd.formdata.getvalue('genbankid')
if fd.genbankid:
fd.genbankid = string.strip(fd.genbankid)
fd.geneid = fd.formdata.getvalue('geneid')
if fd.geneid:
fd.geneid = string.strip(fd.geneid)
if 1:
if not (fd.geneName or fd.refseq or fd.genbankid or fd.geneid):
raise "ValueError"
fd.searchAlias = fd.formdata.getvalue('alias')
if fd.searchAlias != '1':
fd.searchAlias = None
self.page = TextSearchPage(fd)
if fd.returnFmt != 'text':
pass
else:
self.text = self.page.output
self.page = None
elif "ValueError":
self.text = "You need to submit a Gene name, a Refseq ID, or a GenBank ID"
else:
self.text = "Error occurs while searching the database"
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