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# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
#
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License
# as published by the Free Software Foundation, either version 3 of the
# License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
# See the GNU Affero General Public License for more details.
#
# This program is available from Source Forge: at GeneNetwork Project
# (sourceforge.net/projects/genenetwork/).
#
# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
#
#
#
# This module is used by GeneNetwork project (www.genenetwork.org)
#
# Created by GeneNetwork Core Team 2010/08/10
#
# Last updated by GeneNetwork Core Team 2010/10/20
import os
import string
from htmlgen import HTMLgen2 as HT
from base.templatePage import templatePage
from base import webqtlConfig
#XZ, 02/06/2009: Xiaodong created this class
class assignUserToDatasetPage(templatePage):
def __init__(self, fd):
templatePage.__init__(self, fd)
if not self.openMysql():
return
ifVerified = fd.formdata.getvalue('ifVerified')
if ifVerified != 'GN@UTHSC':
heading = "Error page"
detail = ["You are NoT verified as administrator."]
self.error(heading=heading,detail=detail)
return
else:
ProbeSetFreeze_FullName = fd.formdata.getvalue('ProbeSetFreeze_FullName')
User_name = fd.formdata.getvalue('User_name')
if ProbeSetFreeze_FullName and User_name:
ProbeSetFreeze_FullName = string.strip(ProbeSetFreeze_FullName)
User_name = string.strip(User_name)
#XZ, check if the input dataset name exists.
self.cursor.execute( 'select count(FullName) from ProbeSetFreeze where FullName="%s"' % ProbeSetFreeze_FullName )
result = self.cursor.fetchone()
if result:
row_count = result[0]
if row_count:
pass
else:
heading = "Error page"
detail = ["The dataset name %s does NOT exist in database." % ProbeSetFreeze_FullName]
self.error(heading=heading,detail=detail)
return
else:
heading = "Error page"
detail = ["No sql result returned when check dataset name."]
self.error(heading=heading,detail=detail)
return
#XZ, check if the input user name exists.
self.cursor.execute( 'select count(name) from User where name="%s"' % User_name )
result = self.cursor.fetchone()
if result:
row_count = result[0]
if row_count:
pass
else:
heading = "Error page"
detail = ["The user name %s does NOT exist in database." % User_name]
self.error(heading=heading,detail=detail)
return
else:
heading = "Error page"
detail = ["No sql result returned when check user name."]
self.error(heading=heading,detail=detail)
return
self.cursor.execute( 'select AuthorisedUsers from ProbeSetFreeze where FullName="%s"' % ProbeSetFreeze_FullName )
result = self.cursor.fetchone() # The FullName is unique.
if result:
AuthorisedUsers = result[0]
if not AuthorisedUsers:
self.cursor.execute('update ProbeSetFreeze set AuthorisedUsers="%s" where FullName="%s"' %(User_name, ProbeSetFreeze_FullName) )
else:
AuthorisedUsersList=AuthorisedUsers.split(',')
if not AuthorisedUsersList.__contains__(User_name):
AuthorisedUsers = AuthorisedUsers + ',%s' % User_name
self.cursor.execute('update ProbeSetFreeze set AuthorisedUsers="%s" where FullName="%s"' %(AuthorisedUsers, ProbeSetFreeze_FullName) )
else:
heading = "Error page"
detail = ["No sql result returned when query AuthorisedUsers."]
self.error(heading=heading,detail=detail)
return
TD_LR = HT.TD(height=200,width="100%",bgColor='#eeeeee')
dataHeading = HT.Paragraph('Confidential Dataset Table', Class="title")
dataTable = HT.TableLite(border=1, cellpadding=0, cellspacing=0, Class="collap", width="100%")
dataHeaderRow = HT.TR()
dataHeaderRow.append(HT.TD("Dataset Id", Class='fs14 fwb ffl b1 cw cbrb'))
dataHeaderRow.append(HT.TD("Dataset Full Name", Class='fs14 fwb ffl b1 cw cbrb'))
dataHeaderRow.append(HT.TD("Authorised User", Class='fs14 fwb ffl b1 cw cbrb'))
dataTable.append(dataHeaderRow)
self.cursor.execute('select Id, FullName, AuthorisedUsers from ProbeSetFreeze where confidentiality=1 order by FullName,Id')
result = self.cursor.fetchall()
dataInfo = HT.Blockquote( 'There are %d confidential datasets.' % len(result) )
for one_row in result:
ProbeSetFreeze_Id, ProbeSetFreeze_FullName, ProbeSetFreeze_AuthorisedUsers = one_row
dataRow = HT.TR()
dataRow.append(HT.TD("%s" % ProbeSetFreeze_Id, Class='fs12 fwn ffl b1 c222'))
dataRow.append(HT.TD("%s" % ProbeSetFreeze_FullName, Class='fs12 fwn ffl b1 c222'))
dataRow.append(HT.TD("%s" % ProbeSetFreeze_AuthorisedUsers, Class='fs12 fwn ffl b1 c222'))
dataTable.append(dataRow)
assignUserForm = HT.Form(cgi= os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE), enctype='multipart/form-data', name='assignUserForm', submit=HT.Input(type='hidden'))
assignUserForm.append(
HT.Blockquote(
HT.Font('Dataset Full Name ', color='red'),
HT.Input(type='text' ,name='ProbeSetFreeze_FullName',value='', size=50,maxlength=200),
HT.Font(' User name ', color='red'),
HT.Input(type='text' ,name='User_name',value='', size=20,maxlength=20),
HT.Input(type='Submit', value='Submit', Class="button")),
HT.Input(type='hidden',name='FormID',value='assignUserToDataset'),
HT.Input(type='hidden',name='ifVerified',value='GN@UTHSC')
)
TD_LR.append(dataHeading, dataInfo, assignUserForm, dataTable, assignUserForm)
self.dict['body'] = str(TD_LR)
self.dict['title'] = 'Confidential datasets'
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