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# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
#
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License
# as published by the Free Software Foundation, either version 3 of the
# License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
# See the GNU Affero General Public License for more details.
#
# This program is available from Source Forge: at GeneNetwork Project
# (sourceforge.net/projects/genenetwork/).
#
# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
#
#
#
# This module is used by GeneNetwork project (www.genenetwork.org)
#
# Created by GeneNetwork Core Team 2010/08/10
#
# Last updated by GeneNetwork Core Team 2010/10/20
#ImportSelectionPage.py
import string
from base.templatePage import templatePage
from AddToSelectionPage import AddToSelectionPage
#########################################
# Import Selection Page
#########################################
class ImportSelectionPage(AddToSelectionPage):
def __init__(self, fd):
templatePage.__init__(self, fd)
if not self.openMysql():
return
if not fd.genotype:
fd.readGenotype()
self.importFile = fd.formdata.getvalue('importfile')
if not self.importFile:
templatePage.__init__(self, fd)
heading = 'Import Collection'
detail = ['The file you choose to import from doesn\'t exist.']
self.error(heading=heading,detail=detail)
return
self.importFile = string.split(self.importFile, '\n')
RISetLocate = 0
self.searchResult = []
for line in self.importFile:
if line and line[0] != '#':
if not RISetLocate:
RISetLocate = line
if RISetLocate != fd.RISet:
templatePage.__init__(self, fd)
heading = 'Import Collection'
detail = ['The file you choose to import from doesn\'t contain %s selection.' % fd.RISet]
self.error(heading=heading,detail=detail)
return
else:
self.searchResult.append(line)
if not self.searchResult:
templatePage.__init__(self, fd)
heading = 'Import Collection'
detail = ['The file you choose to import from is empty.']
self.error(heading=heading,detail=detail)
return
self.importMethod = fd.formdata.getvalue('importmethod')
if self.importMethod == 'replace':
checkPreSelection = 0
else:
checkPreSelection = 1
if self.genSelection(fd=fd, checkPreSelection = checkPreSelection):
self.writeHTML(fd)
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