web/tutorial/ppt/WebQTLDemo_files/outline_expanded.htm


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 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID1 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p1" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('1')" id=AREF>WebQTL Demonstration
  One<br>
  please link to <br>
  www.webqtl.org/search.html</a></b></font></td>
 </tr>
</table>

<table>
 <tr>
  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Part 1: How to discover shared
  expression patterns (slides 2�14)</font></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Part 2. Discovering upstream modulators
  (15�25)</font></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Discovering downstream targets</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID2 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p2" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('2')" id=AREF>&quot;or
  webqtl.org/search.html...&quot;</a></b></font></td>
 </tr>
</table>

<table>
 <tr>
  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>or webqtl.org/search.html (mirror)</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID3 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p3" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('3')" id=AREF>Search results</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID4 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p4" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('4')" id=AREF>&quot;First page of data:&quot;</a></b></font></td>
 </tr>
</table>

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  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>First page of data: The �Trait Data
  Form�</font></td>
 </tr>
</table>

<br>

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  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID5 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p5" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('5')" id=AREF>&quot;Data sources:&quot;</a></b></font></td>
 </tr>
</table>

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  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Data sources: Phenotpyes and genotypes</font></td>
 </tr>
</table>

<br>

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 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID6 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p6" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('6')" id=AREF>&quot;Return to Trait Data
  page&quot;</a></b></font></td>
 </tr>
</table>

<table>
 <tr>
  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Return to Trait Data page</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID7 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p7" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('7')" id=AREF>&quot;Discovering shared
  expression patterns&quot;</a></b></font></td>
 </tr>
</table>

<table>
 <tr>
  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Discovering shared expression patterns</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID8 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p8" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('8')" id=AREF>&quot;The App transcript
  neighborhood&quot;</a></b></font></td>
 </tr>
</table>

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 <tr>
  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>The App transcript neighborhood</font></td>
 </tr>
</table>

<br>

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  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID9 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p9" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('9')" id=AREF>&quot;Handdrawn sketch of
  the neighborhood&quot;</a></b></font></td>
 </tr>
</table>

<table>
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  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Handdrawn sketch of the neighborhood</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID10 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p10" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('10')" id=AREF>&quot;What a network is
  likely...&quot;</a></b></font></td>
 </tr>
</table>

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  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>What a network is likely to look like
  (but App will not be center of universe).</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID11 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p11" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('11')" id=AREF>Are there experimental
  results to corroborate a link between App with Hsp84-1?</a></b></font></td>
 </tr>
</table>

<table  width=100%>
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  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID12 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p12" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('12')" id=AREF>&quot;2.45 billion scatter
  plots&quot;</a></b></font></td>
 </tr>
</table>

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  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>2.45 billion scatter plots: here is one
  of the best</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID13 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p13" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('13')" id=AREF>&quot;Cross-tissue type
  correlations&quot;</a></b></font></td>
 </tr>
</table>

<table>
 <tr>
  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Cross-tissue type correlations</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID14 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p14" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('14')" id=AREF>&quot;Cross-modal
  correlations:&quot;</a></b></font></td>
 </tr>
</table>

<table>
 <tr>
  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Cross-modal correlations: From mRNA to
  to anatomy and to behavior and pharmacology</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID15 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p15" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('15')" id=AREF>WebQTL<span
  style="mso-spacerun: yes">&nbsp;&nbsp;&nbsp; </span><br>
  link to <br>
  www.webqtl.org/search.html</a></b></font></td>
 </tr>
</table>

<table>
 <tr>
  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Discovering shared expression patterns</font></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Discovering upstream modulators (QTLs)</font></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Discovering downstream targets</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID16 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p16" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('16')" id=AREF>Slide 16</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID17 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p17" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('17')" id=AREF>Slide 17</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID18 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p18" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('18')" id=AREF>WebQTL to exploring
  upstream control</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID19 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p19" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('19')" id=AREF>WebQTL to exploring
  upstream control.</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID20 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p20" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('20')" id=AREF>The whole neighborhood is
  modulated!</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID21 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p21" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('21')" id=AREF>Which gene is the QTL?</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID22 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p22" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('22')" id=AREF>Slide 22</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID23 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p23" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('23')" id=AREF>Slide 23</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID24 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p24" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('24')" id=AREF>Tissue differences in probe
  performance</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID25 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p25" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('25')" id=AREF>Is there known biology to
  link Hars2 with App?</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID26 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p26" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('26')" id=AREF>WebQTL<span
  style="mso-spacerun: yes">&nbsp;&nbsp;&nbsp; </span><br>
  link to <br>
  www.webqtl.org/search.html</a></b></font></td>
 </tr>
</table>

<table>
 <tr>
  <td width=5 nowrap></td>
  <td width="100%"></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Discovering shared expression patterns</font></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Discovering upstream modulators (QTLs)</font></td>
 </tr>
 <tr>
  <td colspan=1></td>
  <td colspan=1><font face=Arial size=2>Discovering downstream targets</font></td>
 </tr>
</table>

<br>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID27 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p27" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('27')" id=AREF>Requirement: The gene must
  be polymorphic to be genetically �upstream�</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID28 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p28" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('28')" id=AREF>Direct correlations between
  genotypes and traits</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID29 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p29" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('29')" id=AREF>What�s downstream of Chr 2
  near Hars2?</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID30 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p30" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('30')" id=AREF>What�s downstream of Chr 2
  near Hars2?</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID31 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p31" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('31')" id=AREF>Does Hars2 correlate with
  Actn2 strongly?</a></b></font></td>
 </tr>
</table>

<table  width=100%>
 <tr>
  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID32 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
  <td width=100%  id="p32" ><font face=Arial size=2><b><a
  href="javascript:parent.base.Slide('32')" id=AREF>Contact for comments and
  improvements:</a></b></font></td>
 </tr>
</table>

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