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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
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<HTML><HEAD><TITLE>Hippocampus mRNA - Hippocampus Illumina RSE (Oct08) RankInv beta</TITLE>
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<P class="title">Hippocampus mRNA - Hippocampus Illumina RSE (Oct08) RankInv beta <A HREF="/webqtl/main.py?FormID=editHtml"><img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A><BR><BR>Accession number: <A HREF="/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=212">GN212</A></P>
<P><font color="#FF0000">Waiting for the data provider to submit their info file</font></P>
<P class="subtitle">Summary:</P>
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<P>Experimental data set: Restraint stress followed by a single ethanol injection (RSE). Survival period X hours.
Please copy text and style for other INFO pages and see Mike Miles INFO pages.
<P>This data set entered by Arthur Centeno and Lu Lu, Oct 15, 2008. Please contact Dr. Lu Lu regarding these expression data at lulu@utmem.edu.
<P><B>Replication and Sample Balance:</B> We obtained matched male and female sample from 28 strains. The following three strains are represented by male samples only: LXS25, 88, and 103. Two other strains, LXS43 and 50 are represented only by female samples.
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<DIR><P><SMALL><B>Legend:</B>Sex balance of the RSE data set is revealed by expression of the <I>Xist</I> RNA (Illumina probe ILM1042800446). Male samples have low expression of <I>Xist</I> (about 7 units), whereas females have high expression (about 13 units). Each bar provides the mean expression value (log2 transformed) for a single strain. Strains with both male and female samples have intermediate averages and large error bars.</SMALL></P>
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<P>Users of these mouse eye data may also find the following complementary resources extremely useful:
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<P class="subtitle">About the cases used to generate this set of data:</P>
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<P class="subtitle">About the tissue used to generate this set of data:</P>
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<td><font color=#FFFFFF>Index</font></td><td><font color=#FFFFFF>TubeID</font></td><td><font color=#FFFFFF>Group</font></td><td><font color=#FFFFFF>Strain</font></td><td><font color=#FFFFFF>Age</font></td><td><font color=#FFFFFF>Sex</font></td><td><font color=#FFFFFF>Source</font></td></tr>
<tr bgcolor="#eeeeee"><td>1</td><td>R2595E.1</td><td>GDP</td><td>129S1/SvImJ</td><td>59</td><td>F</td><td>UTHSC RW</td></tr>
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<P class="subtitle">About downloading this data set:</P>
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<P class="subtitle">About the array platfrom:</P>
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<P class="subtitle">About data values and data processing:</P>
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<td><font color=#FFFFFF>Index</font></td><td><font color=#FFFFFF>TubeID</font></td><td><font color=#FFFFFF>Strain</font></td><td><font color=#FFFFFF>Original CEL</font></td><td><font color=#FFFFFF>Scale factor</font></td><td><font color=#FFFFFF>Background Average</font></td><td><font color=#FFFFFF>Present</font></td><td><font color=#FFFFFF>Absent</font></td><td><font color=#FFFFFF>Marginal</font></td><td><font color=#FFFFFF>AFFX-b-ActinMur (3'/5')</font></td><td><font color=#FFFFFF>AFFX-GapdhMur (3'/5')</font></td><td><font color=#FFFFFF>Batch Id</font></td><td><font color=#FFFFFF>Used for batch control</font></td></tr>
<tr bgcolor="#eeeeee"><td>1</td><td>R2595E.1</td><td>129S1/SvImJ</td><td>R2595E.1.CEL</td><td>1.79</td><td>115</td><td>61.00%</td><td>37.50%</td><td>1.50%</td><td>1.46</td><td>0.77</td><td>1</td><td>Y</td></tr>
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<P class="subtitle">Data source acknowledgment:</P>
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<P class="subtitle">Information about this text file:</P>
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<!-- GEO SERIES DATA GOES HERE -->
<P class="subtitle">GEO Series Data: This section to be used for GEO submission of the whole series of arrays</P>
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<P><B>GSE Series</B>
<P><B>Status</B>
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<P><B>Experiment type</B>
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<P><B>Platforms</B>
<P><B>Samples</B>
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