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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<HTML><HEAD><TITLE>GenomeGraph / The GeneNetwork</TITLE>
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<BODY bottommargin="2" leftmargin="2" rightmargin="2" topmargin="2" text=#000000 bgColor=#ffffff onload="javascript:initialDatasetSelection()">
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<P class="title">Introduction <A HREF="webqtl/main.py?FormID=editHtml">
<img src="images/modify.gif" alt="modify this page" border= 0 valign="middle"></A></P>
<BLOCKQUOTE>
<A HREF="gghelp.html" target="_empty" class="fs14">GenomeGraph</A> is designed to help discover genetic sources of variation in trait and transcript expression at a global level. Choose a database and click on the Mapping button. The y-axis marks the physical locations of genes from which transcripts are synthesized. In contrast, the x-axis plots the locations of the highest <A HREF="glossary.html#L" target="_empty" class="fs14">LRS</A> values associated with each trait or transcript; in essence, the location of the best QTL. The false discovery rate (FDR) can be tuned from 1 (all data shown) to values between 0.1 and 0.01 (only transcripts with significant QTLs shown).
<P>Note that many data set results are still being computed. You may encounter an "in progress" message.
<P>For a more complete explanation see Chesler, Lu and colleagues (<A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15711545" class="fs14" target="_empty">2005</A>), or the <A HREF="gghelp.html" target="_empty" class="fs14">GenomeGraph Help</A> page.
</BLOCKQUOTE>
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<P class="title">Choose Data Set</P>
<Center>
<Form METHOD="POST" ACTION="webqtl/main.py" ENCTYPE="multipart/form-data" NAME="SEARCHFORM">
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<P>Choose Species</P>
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<TD width=20>
</TD>
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<DIV Id="menu0">
<Select NAME="species" size=1 id="species" onChange="fillOptions('species');">
</Select>
</DIV>
</TD>
</TR>
<TR>
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<P>Group</P>
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<Select NAME="cross" size=1 id="cross" onChange="fillOptions('cross');">
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<input type="button" class="button" value="Info" onCLick="javascript:crossinfo();">
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<P>Type</P>
</TD>
<TD width=20>
</TD>
<TD NOWRAP>
<DIV Id="menu2"><Select NAME="tissue" size=1 id="tissue" onChange="fillOptions('tissue');">
</Select>
</DIV>
</TD>
</TR>
<TR>
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<P>Database</P>
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</TD>
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<DIV Id="menu3">
<Select NAME="database" size=1 id="database">
</Select>
<input type="button" class="button" value="Info" onCLick="javascript:databaseinfo();">
</DIV>
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<TR>
<TD colspan=3 align="center" height=50>
<input type="button" CLASS="button" value="Mapping" onClick="databaseFunc(this.form, 'transciptMapping');">
<input type="button" CLASS="button" value="Download" onClick="databaseFunc(this.form, 'genAllDbResult', 'Generating Excel file, please wait.');">
<input type="button" CLASS="button" value="Set To Default" onClick="setDefault(this.form);">
</TD>
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</TABLE>
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