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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<HTML><HEAD><TITLE>GenomeGraph / The GeneNetwork</TITLE>
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<P class="title">Introduction <A HREF="webqtl/main.py?FormID=editHtml">
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<BLOCKQUOTE>
<A HREF="gghelp.html" target="_empty" class="fs14">GenomeGraph</A> is designed to help discover genetic sources of variation in trait and transcript expression at a global level. Choose a database and click on the Mapping button. The y-axis marks the physical locations of genes from which transcripts are synthesized. In contrast, the x-axis plots the locations of the highest <A HREF="glossary.html#L" target="_empty" class="fs14">LRS</A> values associated with each trait or transcript; in essence, the location of the best QTL. The false discovery rate (FDR) can be tuned from 1 (all data shown) to values between 0.1 and 0.01 (only transcripts with significant QTLs shown).
<P>Note that many data set results are still being computed. You may encounter an "in progress" message.
<P>For a more complete explanation see Chesler, Lu and colleagues (<A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15711545" class="fs14" target="_empty">2005</A>), or the <A HREF="gghelp.html" target="_empty" class="fs14">GenomeGraph Help</A> page.
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<P class="title">Choose Data Set</P>
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<P>Choose Species</P>
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<Select NAME="species" size=1 id="species" onChange="fillOptions('species');">
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<P>Group</P>
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<P>Type</P>
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<DIV Id="menu2"><Select NAME="tissue" size=1 id="tissue" onChange="fillOptions('tissue');">
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<P>Database</P>
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<input type="button" CLASS="button" value="Mapping" onClick="databaseFunc(this.form, 'transciptMapping');">
<input type="button" CLASS="button" value="Download" onClick="databaseFunc(this.form, 'genAllDbResult', 'Generating Excel file, please wait.');">
<input type="button" CLASS="button" value="Set To Default" onClick="setDefault(this.form);">
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