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* Elasticsearch
To get the right environment, first you can get a python REPL with something like
: env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ../etc/default_settings.py -cli python
(make sure to use the correct GN2_PROFILE!)
Next try
#+BEGIN_SRC python
from elasticsearch import Elasticsearch, TransportError
es = Elasticsearch([{ "host": 'localhost', "port": '9200' }])
# Dump all data
es.search("*")
# To fetch an E-mail record from the users index
record = es.search(
index = 'users', doc_type = 'local', body = {
"query": { "match": { "email_address": "myname@email.com" } }
})
# It is also possible to do wild card matching
q = { "query": { "wildcard" : { "full_name" : "pjot*" } }}
es.search(index = 'users', doc_type = 'local', body = q)
# To get elements from that record:
record['hits']['hits'][0][u'_source']['full_name']
u'Pjotr'
record['hits']['hits'][0][u'_source']['email_address']
u"myname@email.com"
#+END_SRC
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