blob: 94b0db75af35b7da7a7d598991427410ff81f809 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
|
name: tests
# Run actions when pushing to the testing branch or when you create a
# PR against it
on:
push:
branches: [ testing ]
pull_request:
branches: [ testing ]
jobs:
unittest:
runs-on: ubuntu-latest
container: bonfacekilz/python2-genenetwork2:latest
services:
mariadb:
image: mariadb:latest
ports:
- 3306:3306
env:
MYSQL_USER: gn2
MYSQL_PASSWORD: mysql_password
MYSQL_ALLOW_EMPTY_PASSWORD: yes
MYSQL_DATABASE: db_webqtl_s
MYSQL_ROOT_PASSWORD: mysql_password
options: --health-cmd="mysqladmin ping" --health-interval=5s --health-timeout=2s --health-retries=3
steps:
# Use v1 of checkout since v2 fails
- name: Checkout Project
uses: actions/checkout@v1
# Redis is required by some of the tests
- name: Start Redis
run: |
redis-server --daemonize yes
- name: Run the unit tests
run: |
mkdir -p /genotype_files/genotype/json
env GN2_PROFILE=/usr/gn2-profile TMPDIR=/tmp SERVER_PORT=5004 \
GENENETWORK_FILES=/genotype_files/ bash bin/genenetwork2 \
etc/default_settings.py -c -m unittest discover -v
|
