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|
name: tests
# Run actions when pushing to the testing branch or when you create a
# PR against it
on:
push:
branches: [ testing ]
pull_request:
branches: [ testing ]
jobs:
unittest:
runs-on: ubuntu-latest
container: bonfacekilz/python3-genenetwork2:00ba1f8
services:
mysql:
image: mariadb:15.1
env:
MYSQL_ALLOW_EMPTY_PASSWORD: yes
MYSQL_USER: gn2
MYSQL_PASSWORD: mysql_password
MYSQL_DATABASE: db_webqtl_s
ports:
- 3306:3306
options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=3
steps:
# Use v1 of checkout since v2 fails
- name: Checkout Project
uses: actions/checkout@v1
# Redis is required by some of the tests 6379
- name: Start Redis
run: |
/gn2-profile/bin/screen -dmLS redisconn /gn2-profile/bin/redis-server
- name: Start Genenetwork as a Background Task
run: |
/gn2-profile/bin/screen -dmLS gn2conn
bash -c "env GN2_PROFILE=/gn2-profile \
TMPDIR=/tmp SERVER_PORT=5004 \
WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
etc/default_settings.py"
- name: Run the unit tests
run: |
env GN2_PROFILE=/gn2-profile \
TMPDIR=/tmp SERVER_PORT=5004 \
WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
etc/default_settings.py -c -m unittest discover -v
- name: Test for Broken Links
run: |
env GN2_PROFILE=/gn2-profile \
TMPDIR=/tmp\
WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
etc/default_settings.py -c \
$PWD/test/requests/links_scraper/genelinks.py
|
