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|
name: tests
# Run actions when pushing to the testing branch or when you create a
# PR against it
on:
push:
branches: [ testing ]
pull_request:
branches: [ testing ]
jobs:
unittest:
runs-on: ubuntu-latest
container: bonfacekilz/genenetwork2:latest
steps:
# First start with mariadb set then checkout. The checkout gives
# the mysqld enough time to start
- name: Set up mariadb
run: |
mysql_install_db --user=mysql --datadir=/usr/local/mysql
# Wait for the mysqld_safe process to start
mysqld_safe --user=mysql --datadir=/usr/local/mysql &
# Use v1 of checkout since v2 fails
- name: Checkout Project
uses: actions/checkout@v1
# Redis is required by some of the tests 6379
- name: Start Redis
run: |
/gn2-profile/bin/screen -dmLS redisconn /gn2-profile/bin/redis-server
# Initialise the tables
- name: Bootstrap tables
run: |
mysql -u root -e "SHOW DATABASES;"
mysql -u root -e "CREATE DATABASE db_webqtl_s;"
mysql -u root -e "CREATE USER 'gn2'@'localhost' IDENTIFIED BY 'mysql_password';"
mysql -u root -e "GRANT ALL PRIVILEGES ON *.* TO 'gn2'@'localhost';FLUSH PRIVILEGES;"
- name: Start Genenetwork as a Background Task
run: |
/gn2-profile/bin/screen -dm bash -c "env GN2_PROFILE=/gn2-profile \
TMPDIR=/tmp SERVER_PORT=5004 \
WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
etc/default_settings.py"
- name: Run the unit tests
run: |
env GN2_PROFILE=/gn2-profile \
TMPDIR=/tmp SERVER_PORT=5004 \
WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
etc/default_settings.py -c -m unittest discover -v
- name: Test for Broken Links
run: |
env GN2_PROFILE=/gn2-profile \
TMPDIR=/tmp\
WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
etc/default_settings.py -c \
$PWD/test/requests/links_scraper/genelinks.py
|
