From 5ac15dbb54b96b5ad13ae22c239bb5136a8a5ce1 Mon Sep 17 00:00:00 2001
From: DannyArends
Date: Wed, 9 Sep 2015 16:16:44 +0200
Subject: Fix for issue genenetwork/genenetwork2#113, I added the SESSION_TYPE
 and SECRET_KEY to the default config, this should be overwritten in
 my_settings.py

---
 wqflask/cfg/default_settings.py | 6 +++++-
 wqflask/wqflask/__init__.py     | 8 +++-----
 2 files changed, 8 insertions(+), 6 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py
index 8b5d1313..2978bf37 100755
--- a/wqflask/cfg/default_settings.py
+++ b/wqflask/cfg/default_settings.py
@@ -14,4 +14,8 @@ SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org"
 
 SECURITY_POST_LOGIN_VIEW = "/thank_you"
 
-SQLALCHEMY_POOL_RECYCLE = 3600
\ No newline at end of file
+SQLALCHEMY_POOL_RECYCLE = 3600
+
+SECURITY_PASSWORD_HASH = "bcrypt"
+SESSION_TYPE = "filesystem"
+# SECRET_KEY = "secretkey"
diff --git a/wqflask/wqflask/__init__.py b/wqflask/wqflask/__init__.py
index 8e648c63..478d0a71 100755
--- a/wqflask/wqflask/__init__.py
+++ b/wqflask/wqflask/__init__.py
@@ -6,16 +6,14 @@ print("sys.path is:", sys.path)
 import jinja2
 
 from flask import Flask
-
 from utility import formatting
 
 app = Flask(__name__)
 
-app.config.SECURITY_PASSWORD_HASH='bcrypt'
+app.config.from_object('cfg.default_settings')   # Get the defaults from cfg.default_settings
+app.config.from_envvar('WQFLASK_SETTINGS')       # See http://flask.pocoo.org/docs/config/#configuring-from-files
 
-# See http://flask.pocoo.org/docs/config/#configuring-from-files
-app.config.from_object('cfg.default_settings')
-app.config.from_envvar('WQFLASK_SETTINGS')
+print("Current application configuration:", app.config)
 
 app.jinja_env.globals.update(
     undefined = jinja2.StrictUndefined,
-- 
cgit v1.2.3


From f1c99378cbc0f40297e536b24c9b7af9cbf6b330 Mon Sep 17 00:00:00 2001
From: DannyArends
Date: Wed, 9 Sep 2015 16:36:59 +0200
Subject: Issue genenetwork/genenetwork2#113, forgot to uncomment the
 secret_key

---
 wqflask/cfg/default_settings.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'wqflask')

diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py
index 2978bf37..88159321 100755
--- a/wqflask/cfg/default_settings.py
+++ b/wqflask/cfg/default_settings.py
@@ -18,4 +18,4 @@ SQLALCHEMY_POOL_RECYCLE = 3600
 
 SECURITY_PASSWORD_HASH = "bcrypt"
 SESSION_TYPE = "filesystem"
-# SECRET_KEY = "secretkey"
+SECRET_KEY = "secretkey"
-- 
cgit v1.2.3


From 730ac90d144feb1efc008fdb173424ff2812cfca Mon Sep 17 00:00:00 2001
From: Lei Yan
Date: Thu, 10 Sep 2015 18:44:59 +0000
Subject: Fixed "TypeError: float argument required, not NoneType" about mean.
 Committer: Lei Yan <lei@penguin.uthsc.edu> On branch master

---
 wqflask/base/data_set.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'wqflask')

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index e98258f6..e2db9ad7 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -1171,7 +1171,8 @@ class MrnaAssayDataSet(DataSet):
             
             mean = result[0] if result else 0
 
-            this_trait.mean = "%2.3f" % mean
+            if mean:
+                this_trait.mean = "%2.3f" % mean
 
             #LRS and its location
             this_trait.LRS_score_repr = 'N/A'
-- 
cgit v1.2.3