From f4fbb6d53419a19c6ee67977d18605cdcbb09c0e Mon Sep 17 00:00:00 2001
From: zsloan
Date: Thu, 12 Aug 2021 22:35:53 +0000
Subject: add function for reading in JSON file that lists sample lists unique
 to each study within a group (in this case only BXD Longevity for now)

---
 wqflask/base/data_set.py                 | 9 +++++++++
 wqflask/wqflask/show_trait/show_trait.py | 1 +
 2 files changed, 10 insertions(+)

(limited to 'wqflask')

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 4cb82665..b8f2f9fb 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -398,6 +398,15 @@ class DatasetGroup:
         if maternal and paternal:
             self.parlist = [maternal, paternal]
 
+    def get_study_samplelists(self):
+        study_sample_file = "%s/study_sample_lists/%s.json" % (webqtlConfig.GENODIR, self.name)
+        try:
+            f = open(study_sample_file)
+        except:
+            return None
+        study_samples = json.load(f)
+        return study_samples
+
     def get_genofiles(self):
         jsonfile = "%s/%s.json" % (webqtlConfig.GENODIR, self.name)
         try:
diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py
index c07430dd..d3356bc3 100644
--- a/wqflask/wqflask/show_trait/show_trait.py
+++ b/wqflask/wqflask/show_trait/show_trait.py
@@ -192,6 +192,7 @@ class ShowTrait:
                 [self.dataset.species.chromosomes.chromosomes[this_chr].name, i])
 
         self.genofiles = self.dataset.group.get_genofiles()
+        self.study_samplelists = self.dataset.group.get_study_samplelists()
 
         # ZS: No need to grab scales from .geno file unless it's using
         # a mapping method that reads .geno files
-- 
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