From ebb515b9091237f5f3217517b3675675cbf56eb4 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Mon, 5 Oct 2020 16:14:03 -0500
Subject: Added square root to the transform functions that are only active if
there are no negative values
* wqflask/wqflask/templates/show_trait_transform_and_filter.html - made sqrt option contingent on no negative values
---
.../templates/show_trait_transform_and_filter.html | 145 ++++++++++-----------
1 file changed, 70 insertions(+), 75 deletions(-)
(limited to 'wqflask')
diff --git a/wqflask/wqflask/templates/show_trait_transform_and_filter.html b/wqflask/wqflask/templates/show_trait_transform_and_filter.html
index b4118b04..9fb560a0 100644
--- a/wqflask/wqflask/templates/show_trait_transform_and_filter.html
+++ b/wqflask/wqflask/templates/show_trait_transform_and_filter.html
@@ -1,83 +1,78 @@
<div>
- <div class="form-horizontal">
- <p>Edit or delete values in the Trait Data boxes, and use the
- <strong>Reset</strong> option as
- needed.
- </p>
+ <div class="form-horizontal">
+ <p>Edit or delete values in the Trait Data boxes, and use the
+ <strong>Reset</strong> option as
+ needed.
+ </p>
- <div id="blockMenuSpan" class="input-append" style="margin-bottom: 10px;">
- <label for="remove_samples_field">Block samples by index:</label>
- <input type="text" id="remove_samples_field" placeholder="Example: 3, 5-10, 12">
- <select id="block_group" size="1">
- <option value="primary">
- {{ sample_group_types['samples_primary'] }}
- </option>
- <option value="other">
- {{ sample_group_types['samples_other'] }}
- </option>
- </select>
- <input type="button" id="block_by_index" class="btn btn-danger" value="Block">
- </div>
- <div id="remove_samples_invalid" class="alert alert-error" style="display:none;">
- Please check that your input is formatted correctly, e.g. <strong>3, 5-10, 12</strong>
- </div>
- {% if sample_groups[0].attributes %}
- <div class="input-append" style="margin-top:10px; margin-bottom:10px;">
- <label for="exclude_menu">Block samples by group:</label>
- <select id="exclude_menu" size=1>
- {% for attribute in sample_groups[0].attributes %}
- <option value="{{ sample_groups[0].attributes[attribute].name.replace(' ', '_') }}">
- {{ sample_groups[0].attributes[attribute].name }}</option>
- {% endfor %}
- </select>
- <select id="attribute_values" size=1>
- </select>
- <input type="button" id="exclude_group" class="btn" value="Block">
- </div>
- {% endif %}
- <div>
- <input type="button" id="hide_no_value" class="btn btn-default" value="Hide No Value">
- <input type="button" id="block_outliers" class="btn btn-default" value="Block Outliers">
- <input type="button" class="btn btn-success reset" value="Reset">
- <span class="input-append">
- <input type="button" class="btn btn-default export" value="Export">
- <select class="select optional span2 export_format">
- <option value="excel">Excel</option>
- <option value="csv">CSV</option>
- </select>
- </span>
- <br>
- <div style="margin-top:10px;">
- <input type="button" id="normalize" class="btn btn-success" value="Normalize">
- <select id="norm_method" class="select optional span2">
- {% if negative_vals_exist == "false" %}
- <option value="log2">Log2</option>
- <option value="log10">Log10</option>
- {% endif %}
- <option value="zscore">Z-score</option>
- <option value="qnorm">Quantile</option>
- <option value="sqrt">Square Root</option>
- <option value="invert">Invert +/-</option>
+ <div id="blockMenuSpan" class="input-append" style="margin-bottom: 10px;">
+ <label for="remove_samples_field">Block samples by index:</label>
+ <input type="text" id="remove_samples_field" placeholder="Example: 3, 5-10, 12">
+ <select id="block_group" size="1">
+ <option value="primary">
+ {{ sample_group_types['samples_primary'] }}
+ </option>
+ <option value="other">
+ {{ sample_group_types['samples_other'] }}
+ </option>
+ </select>
+ <input type="button" id="block_by_index" class="btn btn-danger" value="Block">
+ </div>
+ <div id="remove_samples_invalid" class="alert alert-error" style="display:none;">
+ Please check that your input is formatted correctly, e.g. <strong>3, 5-10, 12</strong>
+ </div>
+ {% if sample_groups[0].attributes %}
+ <div class="input-append" style="margin-top:10px; margin-bottom:10px;">
+ <label for="exclude_menu">Block samples by group:</label>
+ <select id="exclude_menu" size=1>
+ {% for attribute in sample_groups[0].attributes %}
+ <option value="{{ sample_groups[0].attributes[attribute].name.replace(' ', '_') }}">
+ {{ sample_groups[0].attributes[attribute].name }}</option>
+ {% endfor %}
+ </select>
+ <select id="attribute_values" size=1>
+ </select>
+ <input type="button" id="exclude_group" class="btn" value="Block">
+ </div>
+ {% endif %}
+ <div>
+ <input type="button" id="hide_no_value" class="btn btn-default" value="Hide No Value">
+ <input type="button" id="block_outliers" class="btn btn-default" value="Block Outliers">
+ <input type="button" class="btn btn-success reset" value="Reset">
+ <span class="input-append">
+ <input type="button" class="btn btn-default export" value="Export">
+ <select class="select optional span2 export_format">
+ <option value="excel">Excel</option>
+ <option value="csv">CSV</option>
</select>
- </div>
- <!--
- {% if sample_groups[0].sample_qnorm is not none %}
- <input type="button" id="qnorm" class="btn btn-default" value="Quantile Normalize">
+ </span>
+ <br>
+ <div style="margin-top:10px;">
+ <input type="button" id="normalize" class="btn btn-success" value="Normalize">
+ <select id="norm_method" class="select optional span2">
+ {% if negative_vals_exist == "false" %}
+ <option value="log2">Log2</option>
+ <option value="log10">Log10</option>
+ <option value="sqrt">Square Root</option>
{% endif %}
- -->
+ <option value="zscore">Z-score</option>
+ <option value="qnorm">Quantile</option>
+ <option value="invert">Invert +/-</option>
+ </select>
</div>
- <br>
+ </div>
+ <br>
- <div>
- <p>Outliers highlighted in
- <strong style="background-color:orange;">orange</strong>
- can be hidden using
- the <strong>Hide Outliers</strong> button.
- </p>
+ <div>
+ <p>Outliers highlighted in
+ <strong style="background-color:orange;">orange</strong>
+ can be hidden using
+ the <strong>Hide Outliers</strong> button.
+ </p>
- <p>Samples with no value (x) can be hidden by clicking
- <strong>Hide No Value</strong> button.
- </p>
- </div>
- </div>
+ <p>Samples with no value (x) can be hidden by clicking
+ <strong>Hide No Value</strong> button.
+ </p>
+ </div>
+ </div>
</div>
\ No newline at end of file
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