From e72ee8b00d0e2d0456f05160916211a1536054c8 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 19 Apr 2023 16:15:53 +0300
Subject: oauth2: Link the data

---
 wqflask/wqflask/oauth2/data.py                     | 27 ++++++++++++++++++++++
 .../templates/oauth2/data-list-phenotype.html      |  4 +++-
 2 files changed, 30 insertions(+), 1 deletion(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/oauth2/data.py b/wqflask/wqflask/oauth2/data.py
index d7be85f0..68a98d98 100644
--- a/wqflask/wqflask/oauth2/data.py
+++ b/wqflask/wqflask/oauth2/data.py
@@ -283,6 +283,7 @@ def link_mrna_data():
             species_name=form["species_name"], dataset_type="mrna"))
 
     def __link_error__(err):
+        error = process_error(err)
         flash(f"{err['error']}: {err['error_description']}", "alert-danger")
         return link_source_url
 
@@ -296,3 +297,29 @@ def link_mrna_data():
         "selected": tuple(json.loads(dataset) for dataset
                                    in form.getlist("selected"))
     }).either(lambda err: __link_error__(process_error(err)), __link_success__)
+
+@data.route("/link/phenotype", methods=["POST"])
+def link_phenotype_data():
+    """Link phenotype data to a group."""
+    form = request.form
+    link_source_url = redirect(url_for("oauth2.data.list_data"))
+    if bool(form.get("species_name")):
+        link_source_url = redirect(url_for(
+            "oauth2.data.list_data_by_species_and_dataset",
+            species_name=form["species_name"], dataset_type="mrna"))
+
+    def __link_error__(err):
+        error = process_error(err)
+        flash(f"{error['error']}: {error['error_description']}", "alert-danger")
+        return link_source_url
+
+    def __link_success__(success):
+        flash(success["description"], "alert-success")
+        return link_source_url
+
+    return oauth2_post("oauth2/data/link/phenotype", json={
+        "species_name": form.get("species_name"),
+        "group_id": form.get("group_id"),
+        "selected": tuple(
+            json.loads(trait) for trait in form.getlist("selected"))}).either(
+                __link_error__, __link_success__)
diff --git a/wqflask/wqflask/templates/oauth2/data-list-phenotype.html b/wqflask/wqflask/templates/oauth2/data-list-phenotype.html
index 8329e023..b79b3096 100644
--- a/wqflask/wqflask/templates/oauth2/data-list-phenotype.html
+++ b/wqflask/wqflask/templates/oauth2/data-list-phenotype.html
@@ -24,7 +24,9 @@
   </div>
 
   <div class="row">
-    <form id="frm-link-phenotypes">
+    <form id="frm-link-phenotypes"
+	  action="{{url_for('oauth2.data.link_phenotype_data')}}"
+	  method="POST">
       <legend style="text-transform: capitalize;">
 	{{dataset_type}}: Link Traits to Group
       </legend>
-- 
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