From cf42e71c07efc772c15956b75db374f0f2849cac Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Fri, 2 Aug 2013 17:55:39 -0500
Subject: Fixed a bug related to groups with genofiles (not sure if it makes
 sense for them not to have genofiles yet)

---
 wqflask/base/data_set.py                     | 6 ++++--
 wqflask/maintenance/get_group_samplelists.py | 2 ++
 2 files changed, 6 insertions(+), 2 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index ffc77299..58f08ae7 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -260,7 +260,6 @@ class DatasetGroup(object):
         if maternal and paternal:
             self.parlist = [maternal, paternal]
 
-
     def get_samplelist(self):
         key = "samplelist:v4:" + self.name
         print("key is:", key)
@@ -275,7 +274,10 @@ class DatasetGroup(object):
             print("  self.samplelist: ", self.samplelist)
         else:
             print("Cache not hit")
-            self.samplelist = get_group_samplelists.get_samplelist(self.name + ".geno")
+            try:
+                self.samplelist = get_group_samplelists.get_samplelist(self.name + ".geno")
+            except IOError:
+                self.samplelist = None
             print("after get_samplelist")
             Redis.set(key, json.dumps(self.samplelist))
             Redis.expire(key, 60*5)
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py
index 99e22904..c9ec3872 100644
--- a/wqflask/maintenance/get_group_samplelists.py
+++ b/wqflask/maintenance/get_group_samplelists.py
@@ -8,6 +8,8 @@ from base import webqtlConfig
 
 
 def process_genofiles(geno_dir=webqtlConfig.GENODIR):
+    print("Yabba")
+    #sys.exit("Dabba")
     os.chdir(geno_dir)
     for geno_file in glob.glob("*"):
         if geno_file.lower().endswith(('.geno', '.geno.gz')):
-- 
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