From 9e9e0e4d440383f617542e810a1115833eafd7bf Mon Sep 17 00:00:00 2001
From: zsloan
Date: Mon, 14 Jun 2021 23:12:27 +0000
Subject: Temporarily return None for tissue correlation and remove rpy2
 imports

---
 .../wqflask/correlation/correlation_functions.py   | 34 +++++++++++-----------
 1 file changed, 17 insertions(+), 17 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/correlation/correlation_functions.py b/wqflask/wqflask/correlation/correlation_functions.py
index 2d25fbd8..c8b9da0e 100644
--- a/wqflask/wqflask/correlation/correlation_functions.py
+++ b/wqflask/wqflask/correlation/correlation_functions.py
@@ -25,7 +25,6 @@
 # Last updated by NL 2011/03/23
 
 import math
-import rpy2.robjects
 import string
 
 from base.mrna_assay_tissue_data import MrnaAssayTissueData
@@ -48,27 +47,28 @@ from flask import Flask, g
 
 def cal_zero_order_corr_for_tiss(primaryValue=[], targetValue=[], method='pearson'):
 
-    R_primary = rpy2.robjects.FloatVector(list(range(len(primaryValue))))
     N = len(primaryValue)
-    for i in range(len(primaryValue)):
-        R_primary[i] = primaryValue[i]
+    # R_primary = rpy2.robjects.FloatVector(list(range(len(primaryValue))))
+    # for i in range(len(primaryValue)):
+    #     R_primary[i] = primaryValue[i]
 
-    R_target = rpy2.robjects.FloatVector(list(range(len(targetValue))))
-    for i in range(len(targetValue)):
-        R_target[i] = targetValue[i]
+    # R_target = rpy2.robjects.FloatVector(list(range(len(targetValue))))
+    # for i in range(len(targetValue)):
+    #     R_target[i] = targetValue[i]
 
-    R_corr_test = rpy2.robjects.r['cor.test']
-    if method == 'spearman':
-        R_result = R_corr_test(R_primary, R_target, method='spearman')
-    else:
-        R_result = R_corr_test(R_primary, R_target)
+    # R_corr_test = rpy2.robjects.r['cor.test']
+    # if method == 'spearman':
+    #     R_result = R_corr_test(R_primary, R_target, method='spearman')
+    # else:
+    #     R_result = R_corr_test(R_primary, R_target)
 
-    corr_result = []
-    corr_result.append(R_result[3][0])
-    corr_result.append(N)
-    corr_result.append(R_result[2][0])
+    # corr_result = []
+    # corr_result.append(R_result[3][0])
+    # corr_result.append(N)
+    # corr_result.append(R_result[2][0])
 
-    return corr_result
+    return [None, N, None]
+    # return corr_result
 
 
 ########################################################################################################
-- 
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