From 9cea1a8d757461ea2359f4c72afa96c7180e417f Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Mon, 6 Dec 2021 16:13:46 +0300
Subject: parse powers to use  from form data

---
 wqflask/wqflask/wgcna/gn3_wgcna.py | 13 +++++++++++--
 1 file changed, 11 insertions(+), 2 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/wgcna/gn3_wgcna.py b/wqflask/wqflask/wgcna/gn3_wgcna.py
index 15728f22..6692a890 100644
--- a/wqflask/wqflask/wgcna/gn3_wgcna.py
+++ b/wqflask/wqflask/wgcna/gn3_wgcna.py
@@ -6,7 +6,7 @@ import requests
 from types import SimpleNamespace
 
 from utility.helper_functions import get_trait_db_obs
-from utility.tools import GN_SERVER_URL
+from utility.tools import GN3_LOCAL_URL
 
 
 def fetch_trait_data(requestform):
@@ -75,13 +75,21 @@ def process_image(response):
 def run_wgcna(form_data):
     """function to run wgcna"""
 
-    wgcna_api = f"{GN_SERVER_URL}api/wgcna/run_wgcna"
+    wgcna_api = f"{GN3_LOCAL_URL}/api/wgcna/run_wgcna"
 
     # parse form data
 
     trait_dataset = fetch_trait_data(form_data)
     form_data["minModuleSize"] = int(form_data["MinModuleSize"])
 
+
+
+
+    form_data["SoftThresholds"]  = [int(threshold.strip())
+                      for threshold in form_data['SoftThresholds'].rstrip().split(",")]
+
+
+
     response = requests.post(wgcna_api, json={
         "sample_names": list(set(trait_dataset["sample_names"])),
         "trait_names": trait_dataset["trait_names"],
@@ -91,6 +99,7 @@ def run_wgcna(form_data):
     }
     ).json()
 
+
     return {
         "results": response,
         "data": process_wgcna_data(response["data"]),
-- 
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