From 94c36c8c93bea837a6e277d1dc3a2bc9120f9044 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Fri, 2 Oct 2020 00:39:06 +0300
Subject: Cast "previous_chr" to an int

* wqflask/wqflask/marker_regression/gemma_mapping.py
(parse_loco_output): Cast "previous_chr" to an int which prevents the
error "Python typeerror: ‘>’ not supported between instances of ‘str’
and ‘int’" from being thrown. The error is **only** thrown in Python3.
---
 wqflask/wqflask/marker_regression/gemma_mapping.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py
index b858b573..68a8d5ba 100644
--- a/wqflask/wqflask/marker_regression/gemma_mapping.py
+++ b/wqflask/wqflask/marker_regression/gemma_mapping.py
@@ -218,9 +218,9 @@ def parse_loco_output(this_dataset, gwa_output_filename):
                             marker['chr'] = int(line.split("\t")[0][3:])
                         else:
                             marker['chr'] = int(line.split("\t")[0])
-                        if marker['chr'] > previous_chr:
+                        if marker['chr'] > int(previous_chr):
                             previous_chr = marker['chr']
-                        elif marker['chr'] < previous_chr:
+                        elif marker['chr'] < int(previous_chr):
                             break
                     else:
                         marker['chr'] = line.split("\t")[0]
-- 
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