From 4f06516befcb16b802afcb81bae28b55279a3c1e Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 4 Sep 2017 02:15:11 -0500
Subject: gemma-wrapper: find binary in profile
---
wqflask/utility/tools.py | 12 ++++++++----
1 file changed, 8 insertions(+), 4 deletions(-)
(limited to 'wqflask')
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index 867bc5c8..c5685cdd 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -113,6 +113,9 @@ def pylmm_command(guess=None):
def gemma_command(guess=None):
return assert_bin(get_setting("GEMMA_COMMAND",guess))
+def gemma_wrapper_command(guess=None):
+ return assert_bin(get_setting("GEMMA_WRAPPER_COMMAND",guess))
+
def plink_command(guess=None):
return assert_bin(get_setting("PLINK_COMMAND",guess))
@@ -240,10 +243,11 @@ JS_GUIX_PATH = get_setting('JS_GUIX_PATH')
JS_GN_PATH = get_setting('JS_GN_PATH')
# assert_dir(JS_GN_PATH)
-PYLMM_COMMAND = pylmm_command()
-GEMMA_COMMAND = gemma_command()
-PLINK_COMMAND = plink_command()
-TEMPDIR = tempdir() # defaults to UNIX TMPDIR
+PYLMM_COMMAND = pylmm_command()
+GEMMA_COMMAND = gemma_command()
+GEMMA_WRAPPER_COMMAND = gemma_wrapper_command()
+PLINK_COMMAND = plink_command()
+TEMPDIR = tempdir() # defaults to UNIX TMPDIR
# ---- Handle specific JS modules
JS_TWITTER_POST_FETCHER_PATH = get_setting("JS_TWITTER_POST_FETCHER_PATH",js_path("Twitter-Post-Fetcher"))
--
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