From 2b0542c47bfce7c9b6df32b002f9218883d329af Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Thu, 15 Jun 2023 21:28:36 +0300
Subject: Add genotype page

* wqflask/wqflask/templates/genotype.html: New template.
* wqflask/wqflask/views.py (get_phenotype): New endpoint.

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 wqflask/wqflask/templates/genotype.html | 86 +++++++++++++++++++++++++++++++++
 wqflask/wqflask/views.py                | 13 +++++
 2 files changed, 99 insertions(+)
 create mode 100644 wqflask/wqflask/templates/genotype.html

(limited to 'wqflask')

diff --git a/wqflask/wqflask/templates/genotype.html b/wqflask/wqflask/templates/genotype.html
new file mode 100644
index 00000000..788586a3
--- /dev/null
+++ b/wqflask/wqflask/templates/genotype.html
@@ -0,0 +1,86 @@
+{% extends "base.html" %}
+
+{% block css %}
+<style type="text/css">
+ .page-header {
+     text-underline-offset: 0.5rem;
+     padding: 1em;
+ }
+</style>
+{% endblock %}
+
+{% block title %}Genotype: {{ name }}{% endblock %}
+
+{% block content %}
+
+<h1 class="page-header">
+    {% if metadata.name %}
+    <u>Genotype: {{ metadata.name }}</u>
+    {% else %}
+    {{ name }}
+    {% endif %}
+</h1>
+
+<div class="container">
+    <table class="table">
+	{% if metadata.datasetName %}
+        <tr>
+            <td><b>Dataset: </b></td>
+            <td>
+		<a href="{{ metadata.genotypeOfDataset }}" target="_blank">{{ metadata.datasetName }}</a>
+	    </td>
+        </tr>
+        {% endif %}
+
+        {% if metadata.inbredSetName %}
+        <tr>
+            <td><b>Group</b></td>
+            <td>{{ metadata.inbredSetName }}</td>
+        </tr>
+        {% endif %}
+
+	{% if metadata.speciesName %}
+        <tr>
+            <td><b>Species</b></td>
+            <td>{{ metadata.speciesName }}</td>
+        </tr>
+        {% endif %}
+
+        {% if metadata.cM %}
+        <tr>
+            <td><b>cM</b></td>
+            <td>{{ metadata.cM }}</td>
+        </tr>
+        {% endif %}
+
+        {% if metadata.mb %}
+        <tr>
+            <td><b>mb</b></td>
+            <td>{{ metadata.mb }}</td>
+        </tr>
+        {% endif %}
+
+        {% if metadata.sequence %}
+        <tr>
+	    <td><b>Sequence</b></td>
+	    <td>metadata.sequence</td>
+        </tr>
+        {% endif %}
+
+        {% if metadata.source %}
+        <tr>
+            <td><b>Source</b></td>
+            <td>{{ metadata.source}}</td>
+        </tr>
+        {% endif %}
+
+        {% if metadata.markerName %}
+        <tr>
+            <td><b>Marker Name</b></td>
+            <td>{{ metadata.markerName}}</td>
+        </tr>
+        {% endif %}
+    </table>
+</div>
+
+{% endblock %}
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 8ac116be..e7a32d34 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -1144,3 +1144,16 @@ def get_phenotype(name):
         "phenotype.html",
         metadata=metadata,
     )
+
+
+@app.route("/genotype/<name>", methods=('GET',))
+def get_genotype(name):
+    metadata = requests.get(
+        urljoin(
+            GN3_LOCAL_URL,
+            f"/api/metadata/genotype/{name}")
+    ).json()
+    return render_template(
+        "genotype.html",
+        metadata=metadata,
+    )
-- 
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