From 026ceff5ea71f07f32db88e01fadfe38dbc39c75 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Thu, 1 Sep 2022 16:29:19 +0300
Subject: Replace g.db with database_connection() context manager

* wqflask/wqflask/update_search_results.py: Replace "Flask" and "g"
import with "database_connection".
(GSearch.__init__): Reformat SQL.  Rename "re" to "results" since "re"
is part of the stdlib.
* wqflask/wqflask/marker_regression/rqtl_mapping.py: Replace flask.g
with database_connection.
(write_covarstruct_file): Replace g.db with database_connection().
* wqflask/wqflask/search_results.py: Replace "Flask" and "g" imports
with "database_connection" import.
(trait_info_str): Replace g.db with database_connection.
* wqflask/wqflask/docs.py (Docs): Use dababase_connection() context
manager.
(update_text): Ditto.
* wqflask/wqflask/marker_regression/display_mapping_results.py:
Replace "Flask" and "g" import with "database_connection".
(DisplayMappingResults.__init__): Use database_connection.
(DisplayMappingResults.drawSNPTrackNew): Ditto.
---
 wqflask/utility/authentication_tools.py | 1 +
 1 file changed, 1 insertion(+)

(limited to 'wqflask/utility/authentication_tools.py')

diff --git a/wqflask/utility/authentication_tools.py b/wqflask/utility/authentication_tools.py
index afea69e1..96cc0b00 100644
--- a/wqflask/utility/authentication_tools.py
+++ b/wqflask/utility/authentication_tools.py
@@ -2,6 +2,7 @@ import json
 import requests
 
 from flask import g
+from wqflask.database import database_connection
 from base import webqtlConfig
 
 from utility.redis_tools import (get_redis_conn,
-- 
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