From d015b37f863c69932072d4ecf9fa1c1cd7fd3ee0 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Wed, 8 Feb 2017 18:27:13 +0000
Subject: Changed the way .fam files are written/read, which fixes the issue
 with GEMMA mapping accuracy.

---
 wqflask/maintenance/get_group_samplelists.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'wqflask/maintenance')

diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py
index 2d48ce78..04e94886 100644
--- a/wqflask/maintenance/get_group_samplelists.py
+++ b/wqflask/maintenance/get_group_samplelists.py
@@ -51,6 +51,6 @@ def get_samplelist_from_plink(genofilename):
     samplelist = []
     for line in genofile:
         line = line.split(" ")
-        samplelist.append(line[0])
+        samplelist.append(line[1])
 
     return samplelist
-- 
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