From 30f305c1b87b4b6c4f308b15d5ae9248dc367e14 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 22 Sep 2022 06:33:47 +0300
Subject: Provide database cursor as argument for TheSpecies and Chromosomes

Provide the database cursor as an argument to the methods of the two
classes:

* wqflask.base.species.TheSpecies
* wqflask.base.species.Chromosomes

Also update dependent code to initialise and pass the cursor where
these classes are used.
---
 wqflask/base/data_set/dataset.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'wqflask/base/data_set')

diff --git a/wqflask/base/data_set/dataset.py b/wqflask/base/data_set/dataset.py
index f035e028..69c842ad 100644
--- a/wqflask/base/data_set/dataset.py
+++ b/wqflask/base/data_set/dataset.py
@@ -45,7 +45,7 @@ class DataSet:
             self.accession_id = self.get_accession_id()
         if get_samplelist == True:
             self.group.get_samplelist(redis_conn)
-        self.species = species.TheSpecies(self)
+        self.species = species.TheSpecies(dataset=self)
 
     def as_dict(self):
         return {
-- 
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