From 0c600598b4f1c8a19b3bf13aa6cb197494a9c122 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 2 Apr 2018 08:49:53 +0000
Subject: Testing moved to Python

---
 test/lib/mapping.rb | 58 -----------------------------------------------------
 1 file changed, 58 deletions(-)
 delete mode 100644 test/lib/mapping.rb

(limited to 'test/lib/mapping.rb')

diff --git a/test/lib/mapping.rb b/test/lib/mapping.rb
deleted file mode 100644
index 20e5bd40..00000000
--- a/test/lib/mapping.rb
+++ /dev/null
@@ -1,58 +0,0 @@
-# In these tests we navigate from the main page to a specific trait then hit the different mapping tool buttons (In this case pylMM and r/qtl) followed by computing the results (marker regressions).
-
-require 'gntest'
-
-class MappingTest
-end
-
-describe MappingTest do
-  before do
-    @agent = Mechanize.new
-    @agent.agent.http.ca_file = '/etc/ssl/certs/ca-certificates.crt'
-  end
-
-  describe MappingTest do
-    it "pylmm mapping tool selection" do
-      url = $host+'/marker_regression'
-
-      json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
-      json["method"] = "pylmm"
-      # p json
-      page = @agent.post(URI.encode(url), json)
-      # Unpacking the page is slow - somehow - but the run is enough as a test
-      # form = page.forms_with("marker_regression")[0]
-      # form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
-      # form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal '6.749'
-    end
-  end
-
-  describe MappingTest do
-    it "R/qtl mapping tool selection" do
-      url = $host+'/marker_regression' # ?trait_id=1435395_s_at&dataset=HC_M2_0606_P'
-
-      json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
-      # p json
-      page = @agent.post(URI.encode(url),
-                         json,
-                         ({'Content-Type' => 'application/x-www-form-urlencoded'}))
-      form = page.forms_with("marker_regression")[0]
-      p form
-      form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
-      form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034"
-    end
-  end
-
-  describe MappingTest do
-    it "CIM mapping tool selection (using reaper)" do
-      url = $host+'/marker_regression'
-
-      json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
-      json["method"] = "reaper"
-      page = @agent.post(URI.encode(url), json)
-      form = page.forms_with("marker_regression")[0]
-      form.fields.select { |fld| fld.name == 'dataset' }.first.value.must_equal 'HC_M2_0606_P'
-      form.fields.select { |fld| fld.name == 'value:BXD1' }.first.value.must_equal "15.034"
-    end
-  end
-
-end
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