From ec3c483b7feef3e36ce467ec35efd57f316031b0 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Mon, 8 Jan 2024 18:40:01 +0300
Subject: Include Entrez summary for a geneID on the ProbeSet page.

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 gn2/wqflask/templates/probeset.html |  7 +++++++
 gn2/wqflask/views.py                | 10 ++++++++++
 2 files changed, 17 insertions(+)

(limited to 'gn2/wqflask')

diff --git a/gn2/wqflask/templates/probeset.html b/gn2/wqflask/templates/probeset.html
index ed96e6c3..327870c8 100644
--- a/gn2/wqflask/templates/probeset.html
+++ b/gn2/wqflask/templates/probeset.html
@@ -72,6 +72,13 @@ mRNA Expression:
 	</tr>
 	{% endif %}
 
+	{% if summary %}
+	<tr>
+	    <td><b>Summary</b></td>
+	    <td>{{ summary }}</td>
+	</tr>
+	{% endif %}
+
         {% if metadata.blatSeq %}
         <tr>
 	    <td><b>BLAT Sequence</b></td>
diff --git a/gn2/wqflask/views.py b/gn2/wqflask/views.py
index cbf530c6..ec138a67 100644
--- a/gn2/wqflask/views.py
+++ b/gn2/wqflask/views.py
@@ -1190,11 +1190,21 @@ def get_probeset(name, dataset=None):
             GN3_LOCAL_URL,
             f"/api/metadata/probesets/{name}")
     ).json()
+    summary = None
+    if gene_id := metadata.get("geneID"):
+        gene_id = gene_id.get("id").split("=")[-1]
+        result = json.loads(
+            requests.get(
+                f"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id={gene_id}&retmode=json"
+            ).content
+        )['result']
+        summary = result[gene_id]['summary']
     return render_template(
         "probeset.html",
         name=name,
         dataset=dataset,
         metadata=metadata,
+        summary=summary,
     )
 
 
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