From 92e0c8b492e96f5875bc2bb1df3e043abde2f280 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Wed, 3 Jul 2024 20:55:37 +0000
Subject: Add link to GeneCup to tool buttons

This also includes a function for converting a list of traits/datasets to symbols, which was added to trait.py
---
 .../static/new/javascript/search_results.js        |  2 +-
 gn2/wqflask/templates/tool_buttons.html            |  4 ++++
 gn2/wqflask/views.py                               | 24 ++++++++++++++++++----
 3 files changed, 25 insertions(+), 5 deletions(-)

(limited to 'gn2/wqflask')

diff --git a/gn2/wqflask/static/new/javascript/search_results.js b/gn2/wqflask/static/new/javascript/search_results.js
index 29050c2b..c89b4ce3 100644
--- a/gn2/wqflask/static/new/javascript/search_results.js
+++ b/gn2/wqflask/static/new/javascript/search_results.js
@@ -309,7 +309,7 @@ $(function() {
       return submit_special("/loading")
   });
 
-  $("#send_to_webgestalt, #send_to_bnw, #send_to_geneweaver").on("click", function() {
+  $("#send_to_webgestalt, #send_to_bnw, #send_to_geneweaver, #send_to_genecup").on("click", function() {
       traits = getTraitsFromTable()
       $("#trait_list").val(traits)
       url = $(this).data("url")
diff --git a/gn2/wqflask/templates/tool_buttons.html b/gn2/wqflask/templates/tool_buttons.html
index c6d1476c..3e716d70 100644
--- a/gn2/wqflask/templates/tool_buttons.html
+++ b/gn2/wqflask/templates/tool_buttons.html
@@ -18,6 +18,10 @@
   BNW
 </button>
 
+<button id="send_to_genecup" class="btn btn-primary submit_special" data-url="/genecup" >
+  GeneCup
+</button>
+
 <button id="wgcna_setup" class="btn btn-primary submit_special" data-url="/wgcna_setup" title="WGCNA Analysis" >
     WGCNA
 </button>
diff --git a/gn2/wqflask/views.py b/gn2/wqflask/views.py
index 5d8a56e5..daddb442 100644
--- a/gn2/wqflask/views.py
+++ b/gn2/wqflask/views.py
@@ -46,12 +46,12 @@ from gn2.wqflask import search_results
 from gn2.wqflask import server_side
 # Used by YAML in marker_regression
 from gn2.base.data_set import create_dataset
+from gn2.base.trait import fetch_symbols
 from gn2.wqflask.show_trait import show_trait
 from gn2.wqflask.show_trait import export_trait_data
 from gn2.wqflask.show_trait.show_trait import get_diff_of_vals
 from gn2.wqflask.heatmap import heatmap
-from gn2.wqflask.external_tools import send_to_bnw
-from gn2.wqflask.external_tools import send_to_webgestalt
+from gn2.wqflask.external_tools import send_to_bnw, send_to_webgestalt
 from gn2.wqflask.external_tools import send_to_geneweaver
 from gn2.wqflask.comparison_bar_chart import comparison_bar_chart
 from gn2.wqflask.marker_regression import run_mapping
@@ -88,8 +88,8 @@ from gn2.utility.redis_tools import get_redis_conn
 
 import gn2.utility.hmac as hmac
 
-from gn2.base.webqtlConfig import TMPDIR
-from gn2.base.webqtlConfig import GENERATED_IMAGE_DIR
+from gn2.base.webqtlConfig import TMPDIR, GENERATED_IMAGE_DIR
+from gn2.base.webqtlConfig import GENE_CUP_URL
 
 from gn2.wqflask.database import database_connection
 
@@ -749,6 +749,22 @@ def geneweaver_page():
     return rendered_template
 
 
+@app.route("/genecup", methods=('POST',))
+def genecup_page():
+    start_vars = request.form
+
+    traits = [trait.strip() for trait in start_vars['trait_list'].split(',')]
+
+    if traits[0] != "":
+        symbol_string = fetch_symbols(traits)
+        return redirect(GENE_CUP_URL % symbol_string)
+    else:
+        rendered_template = render_template(
+            "empty_collection.html", **{'tool': 'GeneWeaver'})
+
+        return rendered_template
+
+
 @app.route("/comparison_bar_chart", methods=('POST',))
 def comp_bar_chart_page():
     start_vars = request.form
-- 
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