From f92657b08cb2dab8b24c69dee525f52c125713a3 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 9 Mar 2015 15:34:16 +0300
Subject: Write genotype file (start)

---
 wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
index d04f9b94..7376a1d5 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
@@ -150,8 +150,10 @@ if options.geno:
     wrln("# Phenotypes = "+str(len(num_snps)))
 
     def out(i,x):
-        # print(i,x)
-        pass
+        wr(str(i)+"\t")
+        for v in x:
+          wr("\t".join(str(v)))
+        wr("\n")
         
     snps = plink.readbed(options.geno+'.bed',num_inds, out)
     # for i in range(num_snps):
-- 
cgit v1.2.3