From d4138b76eae3aa54ba18d44d753cb440aac7a0f8 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Tue, 30 Apr 2013 19:16:51 +0000
Subject: Did a little with correlation_plot.py

---
 wqflask/wqflask/correlation/correlation_plot.py | 7 ++++++-
 wqflask/wqflask/my_pylmm/pyLMM/process_plink.py | 2 +-
 2 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/wqflask/wqflask/correlation/correlation_plot.py b/wqflask/wqflask/correlation/correlation_plot.py
index 4b043fc3..c2b64d70 100644
--- a/wqflask/wqflask/correlation/correlation_plot.py
+++ b/wqflask/wqflask/correlation/correlation_plot.py
@@ -24,6 +24,10 @@ class CorrelationPlot(object):
         self.samples_1 = self.get_samples(self.dataset1, sample_names_1, self.trait1)
         self.samples_2 = self.get_samples(self.dataset2, sample_names_2, self.trait2)
 
+        coords = {}
+        for sample in self.samples_1:
+            coords[sample.name] = (sample.val)
+
 
     def get_sample_names(self, dataset):
         if dataset.group.parlist:
@@ -45,4 +49,5 @@ class CorrelationPlot(object):
                             sample_group_type='primary',
                             header="%s Only" % (dataset.group.name))
 
-        return samples
\ No newline at end of file
+        return samples
+        
\ No newline at end of file
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py b/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py
index 8f7ad243..1274fe50 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py
@@ -17,6 +17,7 @@ identifier = plink_data['identifier']
 print("identifier: ", identifier)
 
 
+
 ps, ts = lmm.human_association(snp,
                                 n,
                                 keep,
@@ -25,4 +26,3 @@ ps, ts = lmm.human_association(snp,
                                 covariate_matrix,
                                 kinship_matrix,
                                 refit)
-
-- 
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