From 79e820cb5c3257eb880a6260357a45b127f15496 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Thu, 16 Jun 2016 08:48:30 +0000
Subject: Menu: removing outdated .coffee file and comments

---
 .../new/javascript/dataset_select_menu.coffee      | 129 ---------------------
 .../static/new/javascript/dataset_select_menu.js   |  14 +--
 2 files changed, 3 insertions(+), 140 deletions(-)
 delete mode 100755 wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee

diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee b/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee
deleted file mode 100755
index 83264da3..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee
+++ /dev/null
@@ -1,129 +0,0 @@
-$ ->
-
-    ## Handle menu changes
-
-    process_json = (data) ->
-        window.jdata = data
-        populate_species()
-        apply_default()
-
-    $.ajax '/static/new/javascript/dataset_menu_structure.json',
-        dataType: 'json'
-        success: process_json
-
-    populate_species = ->
-        species_list = @jdata.species
-        redo_dropdown($('#species'), species_list)
-        populate_group()
-    window.populate_species = populate_species
-
-    populate_group = ->
-        console.log("in populate group")
-        species = $('#species').val()
-        group_list = @jdata.groups[species]
-        redo_dropdown($('#group'), group_list)
-        populate_type()
-    window.populate_group = populate_group
-
-    populate_type = ->
-        species = $('#species').val()
-        group = $('#group').val()
-        type_list = @jdata.types[species][group]
-        redo_dropdown($('#type'), type_list)
-        populate_dataset()
-    window.populate_type = populate_type
-
-    populate_dataset = ->
-        species = $('#species').val()
-        group = $('#group').val()
-        type = $('#type').val()
-        console.log("sgt:", species, group, type)
-        dataset_list = @jdata.datasets[species][group][type]
-        console.log("pop_dataset:", dataset_list)
-        redo_dropdown($('#dataset'), dataset_list)
-    window.populate_dataset = populate_dataset
-
-    redo_dropdown = (dropdown, items) ->
-        console.log("in redo:", dropdown, items)
-        dropdown.empty()
-        for item in items
-            dropdown.append($("<option />").val(item[0]).text(item[1]))
-
-    $('#species').change =>
-        populate_group()
-
-    $('#group').change =>
-        populate_type()
-
-    $('#type').change =>
-        populate_dataset()
-
-    ## Info buttons
-
-    open_window = (url, name) ->
-        options = "menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900"
-        open(url, name, options).focus()
-
-    # Link to info on selected group; use of "Cross"
-    # in the url is outdated and should be changed to group
-    group_info = ->
-        species = $('#species').val()
-        group = $('#group').val()
-        url = "/" + species + "Cross.html#" + group
-        open_window(url, "Group Info")
-
-    $('#group_info').click(group_info)
-
-    # Link to dataset info
-    dataset_info = ->
-        dataset = $('#dataset').val()
-        url = "/webqtl/main.py?FormID=sharinginfo&InfoPageName=" + dataset
-        open_window(url, "Dataset Info")
-
-    $('#dataset_info').click(dataset_info)
-
-
-    ## Handle setting new default drop downs
-
-    make_default = ->
-        holder = {}
-        for item in ['species', 'group', 'type', 'dataset']
-            holder[item] = $("##{item}").val()
-        jholder = JSON.stringify(holder)
-        $.cookie('search_defaults', jholder,
-                 expires: 365)
-
-    apply_default = ->
-        defaults = $.cookie('search_defaults')
-        if defaults
-            # defaults are stored as a JSON string in a cookie
-            defaults = $.parseJSON(defaults)
-        else
-            # If user hasn't set a default we use this
-            # (Most of GN's data is from BXD mice)
-            defaults =
-                species: "mouse"
-                group: "BXD"
-                type: "Hippocampus mRNA"
-                dataset: "HC_M2_0606_P"
-
-        for item in [['species', 'group']
-                     ['group', 'type']
-                     ['type', 'dataset'],
-                     ['dataset', null]]
-            $("##{item[0]}").val(defaults[item[0]])
-
-            if item[1]
-                populate_function = "populate_" + item[1]
-                console.log("Calling:", populate_function)
-                window[populate_function]()
-
-    check_search_term = ->
-        search_term = $('#tfor').val()
-        console.log("search_term:", search_term)
-        if (search_term == "")
-            alert("Please enter one or more search terms or search equations.")
-            return false
-
-    $("#make_default").click(make_default)
-    $("#btsearch").click(check_search_term)
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
index dcf1ae6f..d4110e11 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
+++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
@@ -1,14 +1,9 @@
-// Generated by CoffeeScript 1.8.0
 $(function() {
     var gndata;  // loaded once for all to use
     process_json = function(data) {
         populate_species();
         return apply_default();
     };
-  // $.ajax('/static/new/javascript/dataset_menu_structure.json', {
-  //   dataType: 'json',
-  //   success: process_json
-  // });
   $.getJSON("http://localhost:8880/int/menu/main.json",
   function(data) {
     gndata = data;
@@ -21,8 +16,8 @@ $(function() {
   });
 
   var populate_species = function() {
-    var species_list = Object.keys(gndata.types).map(function(species) {
-      var mitem = gndata.types[species][0]
+    var species_list = Object.keys(gndata.menu).map(function(species) {
+      var mitem = gndata.menu[species].menu
       // console.log("Species menu:",species,mitem)
       return [species,mitem];
     });
@@ -45,10 +40,7 @@ $(function() {
   var populate_type = function() {
     var species = $('#species').val();
     var group = $('#group').val();
-    // var type_list = gndata.types[species][group].map(function(item) {
-    //    return [item[1],item[1]];
-    //})
-    var type_list = gndata.types[species][1][group].map(function(item) {
+    var type_list = gndata.menu[species].types[group].map(function(item) {
         return [item,item];
     });
 
-- 
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