From 71a859c9facc7ae49d43e3e995166ad8dcb586cb Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Wed, 17 Nov 2021 08:11:12 +0300
Subject: isolate SQL_URI parse to a function

---
 wqflask/base/data_set.py | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 2e401c8e..f0a930a5 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -40,7 +40,8 @@ from base import species
 from base import webqtlConfig
 from flask import Flask, g
 from base.webqtlConfig import TMPDIR
-from gn3.db_utils import parse_db_url
+from urllib.parse import urlparse
+from utility.tools import SQL_URI
 import os
 import math
 import string
@@ -1257,6 +1258,13 @@ def geno_mrna_confidentiality(ob):
         return True
 
 
+
+def parse_db_url():
+    parsed_db = urlparse(SQL_URI)
+
+    return (parsed_db.hostname, parsed_db.username,
+            parsed_db.password, parsed_db.path[1:])
+
 def query_table_timestamp(dataset_type: str):
     """function to query the update timestamp of a given dataset_type"""
 
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