From 70e66491d0fa84ba3c0ab6748061f3dd69d710be Mon Sep 17 00:00:00 2001
From: zsloan
Date: Mon, 5 Nov 2018 17:56:11 +0000
Subject: Fixed quantile normalization issue

---
 wqflask/wqflask/show_trait/show_trait.py            | 2 +-
 wqflask/wqflask/templates/show_trait_edit_data.html | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py
index 88ff5345..f75302f6 100644
--- a/wqflask/wqflask/show_trait/show_trait.py
+++ b/wqflask/wqflask/show_trait/show_trait.py
@@ -301,6 +301,7 @@ def quantile_normalize_vals(sample_groups):
             p_list.append(((i+1) - 0.5)/len(trait_vals))
 
         z = ss.norm.ppf(p_list)
+
         normed_vals = []
         for rank in ranked_vals:
             normed_vals.append("%0.3f" % z[int(rank)-1])
@@ -317,7 +318,6 @@ def quantile_normalize_vals(sample_groups):
                 continue
 
         qnorm_vals = normf(trait_vals)
-
         qnorm_vals_with_x = []
         counter = 0
         for sample in sample_type.sample_list:
diff --git a/wqflask/wqflask/templates/show_trait_edit_data.html b/wqflask/wqflask/templates/show_trait_edit_data.html
index 16878a8f..bd40946d 100644
--- a/wqflask/wqflask/templates/show_trait_edit_data.html
+++ b/wqflask/wqflask/templates/show_trait_edit_data.html
@@ -125,7 +125,7 @@
         
                         {# Todo: Add IDs #}
                         <td class="column_name-Value" align="right">
-                          <input type="text" data-value="{{ sample.display_value }}" data-qnorm="{{ qnorm_vals[outer_loop.index - 1][0][loop.index - 1] }}" name="{{ 'value:' + sample.name }}"
+                          <input type="text" data-value="{{ sample.display_value }}" data-qnorm="{{ qnorm_vals[outer_loop.index - 1][loop.index - 1] }}" name="{{ 'value:' + sample.name }}"
                                  style="text-align:right;"
                                  class="trait_value_input edit_sample_value"
                                  value="{{ sample.display_value }}"
@@ -140,7 +140,7 @@
         
                         {# Todo: Add IDs #}
                         <td class="column_name-SE" align="right">
-                          <input type="text" data-value="{{ sample.display_variance }}" data-qnorm="{{ qnorm_vals[outer_loop.index - 1][1][loop.index - 1] }}" name="{{ 'variance:' + sample.name}}"
+                          <input type="text" data-value="{{ sample.display_variance }}" data-qnorm="x" name="{{ 'variance:' + sample.name}}"
                                  style="text-align:right;"
                                  class="trait_value_input edit_sample_se"
                                  value="{{ sample.display_variance }}"
-- 
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