From 399fc011556793b3039f64a0050bb112c09ade6d Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 6 Sep 2022 13:53:40 +0300
Subject: Placeholder: Set trait location to ??? if the Mb is NULL
---
wqflask/wqflask/correlation/rust_correlation.py | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/wqflask/wqflask/correlation/rust_correlation.py b/wqflask/wqflask/correlation/rust_correlation.py
index a4a08a54..cfa360d0 100644
--- a/wqflask/wqflask/correlation/rust_correlation.py
+++ b/wqflask/wqflask/correlation/rust_correlation.py
@@ -47,6 +47,11 @@ def query_probes_metadata(dataset, trait_list):
def get_metadata(dataset, traits):
+ """Retrieve the metadata"""
+ def __location__(probe_chr, probe_mb):
+ if probe_mb:
+ return f"Chr{probe_chr}: {probe_mb:.6f}"
+ return f"Chr{probe_chr}: ???"
return {trait_name: {
"name": trait_name,
@@ -58,7 +63,7 @@ def get_metadata(dataset, traits):
"description": description,
"additive": additive,
"lrs_score": f"{lrs:3.1f}",
- "location": f"Chr{probe_chr}: {probe_mb:.6f}",
+ "location": __location__(probe_chr, probe_mb),
"lrs_location": f"Chr{chr_score}: {mb:.6f}"
} for trait_name, probe_chr, probe_mb, symbol, mean, description,
--
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