From 25cafac773edf3a053819b53ef860321a678941a Mon Sep 17 00:00:00 2001
From: zsloan
Date: Wed, 13 Oct 2021 17:46:18 +0000
Subject: Fix issue where score_type being set wrong caused an error when
 exporting mapping results (a while back it was changed from LOD to -logP)

---
 wqflask/wqflask/marker_regression/run_mapping.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py
index 80094057..769b9240 100644
--- a/wqflask/wqflask/marker_regression/run_mapping.py
+++ b/wqflask/wqflask/marker_regression/run_mapping.py
@@ -230,7 +230,7 @@ class RunMapping:
 
                     self.perm_strata = get_perm_strata(
                         self.this_trait, primary_samples, self.categorical_vars, self.samples)
-            self.score_type = "LOD"
+            self.score_type = "-logP"
             self.control_marker = start_vars['control_marker']
             self.do_control = start_vars['do_control']
             if 'mapmethod_rqtl_geno' in start_vars:
-- 
cgit 1.4.1