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2021-04-27templates: submit_trait.html: Add field for inputting trait nameBonfaceKilz
2021-04-26fix:remove debug statements and commented codeAlexander Kabui
2021-04-26test for probe-type sample and tissueAlexander Kabui
2021-04-23debugging for fetching probe dataAlexander Kabui
2021-04-23Remove stale commentsBonfaceKilz
2021-04-23Apply PEP-8BonfaceKilz
2021-04-23Rewrite For Loop in a more Pythonic wayBonfaceKilz
2021-04-23Rename index_page_orig to index_pageBonfaceKilz
2021-04-23Add full link to genetic data collected as part of WebQTL projectBonfaceKilz
2021-04-23Move looped sql query into one statement in "get_species_groups"BonfaceKilz
It's in-efficient to have a sql query executed in a loop. As data grows, the query becomes slower. It's better to let sql handle such queries.
2021-04-23Remove stale commentsBonfaceKilz
2021-04-22Account for situations where the trait symbol is null for ProbeSet traits; ↵zsloan
previously it could throw an error
2021-04-22Added JS that sets the 'add to collection' dropdown to default to the ↵zsloan
collection the use set as their default collection
2021-04-20refactor code for iterating mrna tissue dataAlexander Kabui
2021-04-19Specify only getting the first two items after splitting the trait/dataset ↵zsloan
input string
2021-04-19Removedu nused function from network_graph.pyzsloan
2021-04-19Removed commented out js filezsloan
2021-04-19Fixed NIAAA link because apparently it was changedzsloan
2021-04-19Removed unused codezsloan
2021-04-19fix for correlation_demo templateAlexander Kabui
2021-04-17refactoring fetching of dataAlexander Kabui
2021-04-17use gn3 libAlexander Kabui
2021-04-16add demo templateAlexander Kabui
2021-04-15change api portAlexander Kabui
2021-04-14Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-04-14Added JS that automatically selects the default collection if it's setzsloan
2021-04-14Added option to set default collection to collections/view.htmlzsloan
2021-04-09Merge branch 'testing' of github.com:genenetwork/genenetwork2 into acentenoArthur Centeno
2021-04-09link to webinarsArthur Centeno
2021-04-09Changed connditional in show_trait.js to check categorical_attr_exists ↵zsloan
instead of just checking if there are case attributes
2021-04-09Replaced the conditional for whether to show 'Block samples by group' to ↵zsloan
instead check categorical_attr_exists
2021-04-09Store categorical_attr_exists as a string instead of boolean since ↵zsloan
apparently the boolean doesn't get passed to the template properly
2021-04-09Added varaiable 'categorical_attr_exists' tracking whether there are any ↵zsloan
case attributes with fewer than 10 distinct values, since it currently throws a JS error if case attributes exist but none have fewer than 10 distinct values (specifically when we have RRID as a case attribute)
2021-04-08minor fixAlexander Kabui
2021-03-30Shifted some code out of the try/except that shouldn't have been inside itzsloan
2021-03-30Shifted the 'try' in a try/except up some to account for a possible error ↵zsloan
with calculating PCA that I don't know the cause of yet
2021-03-29Changed minimum num_overlap to 2, since there apparently need to be that ↵zsloan
many shared samples torun scipy.stats.pearsonr/spearmanr
2021-03-29Check if a trait in a collection is a properly structured string to avoid an ↵zsloan
error caused by an empty string be stored in a collection's trait list
2021-03-28refactor correlation integration codeAlexander Kabui
2021-03-26Split rat RRID by _ in order to pull out just the ID number, since the ↵zsloan
number is needed for the links
2021-03-26Added try/except to deal with the possibility of user_id being stored in ↵zsloan
Redis as both string and bytes
2021-03-25minor fixAlexander Kabui
2021-03-25fix import errorAlexander Kabui
2021-03-25modify gn3 integration codeAlexander Kabui
2021-03-25add initial demo template pageAlexander Kabui
2021-03-25add code for calling gn3 correlation endpointAlexander Kabui
2021-03-24initial commit for integrating to gn3 apiAlexander Kabui
2021-03-24initial commit for gn3-correlation api integrationAlexander Kabui
2021-03-19Added other BXD individual groups to the list of BXD groups used when ↵zsloan
drawing the Gene Band
2021-03-17Added the RRID urls for mouse and rat to webqtlConfigzsloan
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