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2021-10-18Merge pull request #562 from zsloan/feature/add_resizeable_columnszsloan
Add Resizeable Table Columns
2021-10-14Merge pull request #605 from genenetwork/clustered_heatmapsBonfaceKilz
Clustered heatmaps
2021-10-14Merge pull request #607 from Alexanderlacuna/feature/integrate-gn3-wgcnaBonfaceKilz
test template for gn3 wgcna
2021-10-13Fix issue where score_type being set wrong caused an error when exporting ↵zsloan
mapping results (a while back it was changed from LOD to -logP)
2021-10-13Update the action button textFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Update the action button text to more closely correspond to the action that the button triggers.
2021-10-13resolve merge conflictAlexander Kabui
2021-10-13disable heatmap imageAlexander Kabui
2021-10-12Merge branch 'testing' into feature/add_resizeable_columnszsloan
2021-10-12Fixed filename in test_gen_covariates_file; I think that the hash changed ↵zsloan
because I changed the test dataset name from 'dataser_1' to 'dataset_1'
2021-10-12Fix R/qtl mapping testzsloan
2021-10-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵zsloan
feature/add_rqtl_pairscan
2021-10-12Fixed test_gen_covariates_filezsloan
2021-10-12Fixed export_mapping_results test in test_run_mapping.pyzsloan
2021-10-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵Frederick Muriuki Muriithi
clustered_heatmaps
2021-10-10replace form input with select optionsAlexander Kabui
2021-10-10remove commented code and debug statementsAlexander Kabui
2021-10-10ui:show phenotypes pageAlexander Kabui
2021-10-10minor fixes for uiAlexander Kabui
2021-10-10modifications for wgcna form pageAlexander Kabui
2021-10-10enable wgcna in gn2 toolbarAlexander Kabui
2021-10-10pep8 formatting && remove unused functionsAlexander Kabui
2021-10-10call run_wgcna in views && render test templateAlexander Kabui
2021-10-10pep8 formatting fix for parsing response dataAlexander Kabui
2021-10-09add function to call wgcna apiAlexander Kabui
2021-10-09add function to process trait sample dataAlexander Kabui
2021-10-09function to fetch trait dataAlexander Kabui
2021-10-09add function to process image dataAlexander Kabui
2021-10-09unittest for processing wgcna outputAlexander Kabui
2021-10-09add function to process gn3 wgcna outputAlexander Kabui
2021-10-08Fixed some issues with scale and score_type in mapping export + include ↵zsloan
mapping method in export filename
2021-10-08Fix issue where outliers weren't being highlighted for rows drawn by ↵zsloan
Scroller (so all rows beyond a certain point)
2021-10-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵Frederick Muriuki Muriithi
clustered_heatmaps
2021-10-06display imagesAlexander Kabui
2021-10-06Enable selection of heatmap orientationFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced.
2021-10-06tests: test_run_mapping: Add missing "name" attribute to testsBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing callsBonfaceKilz
After adding the missing attribute to "self.trait", we need to also need to update some missing calls.
2021-10-06tests: test_run_mapping: Fix failing assert when getting perm strataBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing attribute to "self.trait"BonfaceKilz
2021-10-06tests: test_run_mapping: Add missing positional argument "vals_hash"BonfaceKilz
2021-10-06add datatable for eigengenesAlexander Kabui
2021-10-05Merge branch 'testing' into feature/add_resizeable_columnszsloan
2021-10-05Removed permutation options for pair-scan for now since they're probably not ↵zsloan
necessary
2021-10-05code format for wgcna results fileAlexander Kabui
2021-10-05js formattingAlexander Kabui
2021-10-05move xterm code to setupAlexander Kabui
2021-10-05work on wgcna_setup formAlexander Kabui
2021-10-04Changed get_user_groups to pull both the ID and details in the for loop from ↵zsloan
group_list by using group_list.items()
2021-10-04Add group link for user member groupszsloan
2021-10-04Fixed some issue with the way the Pair Scan tab appeared in ↵zsloan
show_trait_mapping_tools.html
2021-10-04wqflask: resource_manager: Remove loggerBonfaceKilz
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