genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2019-08-15	Added change to make search result page description correct for LOD ↵	zsloan
	searches, since that was missing from last commit
2019-08-15	LOD searches should now also work	zsloan

2019-08-14	removed LOD text from index page until LOD search works and cleaned up ↵	zsloan
	mapping options appearance/text some
2019-08-14	Genome browser now takes chromosome list and lengths as input so it will ↵	zsloan
	work correctly with non-mouse species or centimorgan positions
2019-08-13	Updated text on main search page	zsloan

2019-08-13	Annotation links for markers only appear if they're in our database now	zsloan

2019-08-12	Fixed some things to update the genome browser and get it running correctly	zsloan
	Fixed issue where trait page for genotype traits didn't work Removed bad y axis title on probability plot
2019-08-07	Added Christian's genome browser, but still need to clean things up a bunch ↵	zsloan
	since now it has to create two separate marker lists
2019-08-07	Fixed issue with non-LOCO GEMMA mapping	zsloan

2019-08-07	Changed rn3 to rn6 for a couple external links on the trait page	zsloan
	Made some text bold on trait page details
2019-08-02	Updated phenogen link in mapping results	zsloan

2019-08-02	Fixed issue that caused heatmap to not work	zsloan

2019-08-02	Fixed issue where zooming into chromosomes or range didn't work with reaper	zsloan

2019-08-02	Fixed issue where resizing correlation page could make buttons get pushed down	zsloan

2019-08-02	Added the gif for the loading screen	zsloan

2019-08-01	Updated aliases to get all species aliases and remove duplicates	zsloan

2019-08-01	Added wikidata aliases	zsloan
	Fixed year to not be a hyperlink when no pubmed id Fixed first column width so it doesn't go onto two lines for trait details
2019-08-01	Replaced loading bar with a gif that should work in Safari	zsloan

2019-08-01	Made some more aesthetic changes to various pages and charts/figures	zsloan
	Added some information to the mapping loading page
2019-07-31	Fixed header to not have a fixed width, and added min-widths to many pages ↵	zsloan
	to avoid them ever looking strange when the window's width is lowered Significnatly improved correlation matrix output Fixed issue where zooming into Mb ranges with GEMMA mapping output often showed no results; this fix is not ideal and is just a way to work around the results currently not being sorted correctly. Later I should fix the sorting
2019-07-30	Fixed correlation matrix width, colors, and padding	zsloan

2019-07-29	Fixed minor issue with previous commit	zsloan

2019-07-29	Forgot to remove an unused import	zsloan

2019-07-29	Added Christian's RUST qtlreaper as an option	zsloan

2019-07-26	Fixed the intercept line and added information to top of figure	zsloan

2019-07-26	Scatterplots should have consistent decimal places for axes now	zsloan

2019-07-23	Added change to automatically update datasets list using rest api instead of ↵	zsloan
	json file Removed option to edit certain html pages, like news, policies, etc
2019-07-19	Fixed issue where chr in lower case didn't work for LRS term search	zsloan

2019-07-18	Made change that should fix encoding issue, fingers crossed	zsloan

2019-07-17	Hopefully fixed the issue with weird characters in search result descriptions	zsloan

2019-07-17	Error page should now correctly appear when doing LOCO mapping with GEMMA ↵	zsloan
	(if there's no appropriate genotype file)
2019-07-15	Fixed issue where qnorm values were wrong	zsloan
	Fixed issue where traits couldn't be highlighted or added to a collection from global search results Fixed issue where third party links threw an error for some traits on the trait page Fixed issue where clicking a row's link unhighlighted it
2019-07-06	Fixed issue where spaces were inserted into descriptions for mRNA expression ↵	zsloan
	data in the regular search Created default collection name when the user submits a collection without naming it
2019-07-03	Fixed bug for creating one of the third party links on the trait page	zsloan
	Changed text in several pages (submit trait, mapping error) Changed header menu structure some
2019-07-01	a	zsloan

2019-06-30	Made external links on trait page open new tab/window	zsloan

2019-06-28	Added regression lines to correlation scatterplots	zsloan
	Fixed bug when doing correlations of non-phenotype traits against phenotype datasets Changed color of manhattan plot points (subject to change)
2019-06-25	Added dropdown generation to REST API and switched to using it to generate ↵	zsloan
	the main search page dropdown
2019-06-24	Fixed issue that caused search result pages to not work in IE	zsloan

2019-06-24	Fixed issue that caused API genotypes query to not work when no limit_to set	zsloan

2019-06-24	Got non-LOCO GEMMA mapping working with gemma-wrapper (so caching should ↵	zsloan
	work for that now) Fixed position digits and row highlighting on interval analyst table Updated default MAF to 0.05 Updated footer text
2019-06-18	Fixed issue with sorting involving 0's on trait page	zsloan
	Fixed links to dataset info pages in search results and correlation results pages
2019-06-18	Changed the text displayed on search results page	zsloan
	Added some links to index page Removed footer from search results page
2019-06-18	Phenotype results with long descriptions/authors look much better now + ↵	zsloan
	added some links to index page
2019-06-14	Added some metadata to top of global search results	zsloan

2019-06-12	Fixed error when zooming in on chromosome for rat mapping results	zsloan

2019-06-09	Had an extra parenthesis to remove	zsloan

2019-06-09	Issue with encoding should be fixed for both global searches now	zsloan

2019-06-09	Fixed javascript error with phenotype global search	zsloan

2019-06-09	Fixed issue that caused heatmap to not work (needed to tell it to use reaper ↵	zsloan
	for generating genotype object) Fixed issue that caused all collection page functions to not load correctly (datatables wasn't loading correctly due to a new column being added)