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2021-01-06add correlation testAlexanderlacuna
2021-01-06add unit testsfor api/correlation.pyAlexanderlacuna
2021-01-06add unit tests for api/mapping.pyAlexanderlacuna
2021-01-06Merge pull request #404 from Uditgulati/snp_browser_changesBonfaceKilz
WIP: Snp browser changes
2021-01-05Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-01-05Fixed issue where normalization method wasn't removed from stats figure axis ↵zsloan
titles when table values are reset
2021-01-05add server side class unit testsuditgulati
2021-01-05Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵uditgulati
snp_browser_changes
2021-01-04Removed logging line from init_genome_browser.jszsloan
2021-01-04Only show Add button and run change_buttons function when genotypes are ↵zsloan
databased
2021-01-04Added call to change_buttons to mapping results table (which deals with ↵zsloan
highlighting rows and enabling the Add (to collection) button Also added a "check_node" paramter to change_buttons since sometimes the checkbox is in the second node instead of the first when it's preceded by blank text
2021-01-04Removed some logging from stats.jszsloan
2021-01-04Removed Scatterplot Matrix since it isn't working and wasn't really used to ↵zsloan
begin with
2021-01-04Increased the top margin on the trait page Bar Chart, which should prevent ↵zsloan
the chart options from overlapping with the title
2021-01-04Removed logging line from draw_probability_plot.jszsloan
2020-12-29Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-12-29Used a try/catch to deal with situations where there's no SE/var column, ↵zsloan
since apparently var_nodes wasn't undefined, causing the previous check to not work
2020-12-29Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵zsloan
feature/pass_sample_vals_as_json
2020-12-29Added location_type to the list of inputs to correlation page (a list of ↵zsloan
form inputs the correlation page needs is passed with it so it doesn't get unrelated form inputs)
2020-12-29update tests for run gemmaAlexanderkabui
2020-12-28Incorporated location_type into the filtering logic for the correlation pagezsloan
2020-12-28Added JS controlling which location_type options are available depending ↵zsloan
upon the selected target dataset
2020-12-28Changed correlation options to always show the location field and both ↵zsloan
location_type options, since one or the other will always apply
2020-12-28Added 'Location Type' option to show_trait correlation optionszsloan
2020-12-28Fix issue that caused error bars to not work for bar chartzsloan
2020-12-25Added edit_data_change to block_by_attribute_value so it will update stats ↵zsloan
figures after using that tool
2020-12-18Added redirect_uri to the ORCID_AUTH_URL since it wasn't working due to ↵zsloan
missing this parameter
2020-12-18This should fix the Github login errorzsloan
2020-12-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-12-18Added Additive Effect when using LOCO with GEMMAzsloan
2020-12-18Changed show_corr_results.py to get sample names/values from the JSON ↵zsloan
sample_vals parameter
2020-12-18Changed display_mapping_results.py to get sample names and values from the ↵zsloan
JSON sample_vals parameter
2020-12-18Changed run_mapping.py to get sample names and values from JSON instead of a ↵zsloan
bunch of separate input parameters
2020-12-18Changed mapping_results.html to have a single sample_vals input instead of ↵zsloan
separate ones for every sample + added sample_vals to the list of inputs sent to the loading page
2020-12-18Added sample_vals to the list of mapping inputs that determines what is ↵zsloan
included in start_vars when trait page parameters are passed to the mapping loading page
2020-12-18Added sample_vals input element that is meant to contain JSON for all sample ↵zsloan
values (pulled from the sample table using DataTables API in show_trait.js)
2020-12-18Changed views.py to accept sample data for loading page and mapping as JSON ↵zsloan
instead of having separate form parameters for each sample + removed some commented out code/logging
2020-12-18Added function that fetches sample data and converts it to JSON to show_trait.jszsloan
2020-12-17Fixed some logic to work correctly with the changes to the way correlation ↵zsloan
filters work + changed correlation python code to include Mean (mean expression) for phenotype results
2020-12-17Added Mean (mean expression) column to phenotype correlation results tablezsloan
2020-12-17Fixed a couple logic issues and changed indentation in ↵zsloan
show_trait_calculate_correlations.html
2020-12-17Replaced Pheno with Publish for identifying dataset type in corr optionszsloan
2020-12-17Correlation Min Expr and Location filters display depending upon the ↵zsloan
selected target dataset now, instead of the trait's dataset
2020-12-17remove test for parse_gemma_output and modify run_gemma tests (#533)Alexander Kabui
2020-12-16Removed unused JS and fixed mapping covariate selection to work for both ↵zsloan
R/qtl and GEMMA
2020-12-16Made change to the way sample table width is calculated to account for ↵zsloan
sample name width
2020-12-16Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-12-16Removed ID/Sample/Value from Show/Hide Columns in trait page and only show ↵zsloan
the option if columns other than those exist
2020-12-16Set all attribute names to lower-case for sorting in order to keep order ↵zsloan
consistent
2020-12-16Merge branch 'testing' into replace-bootstrapBonfaceKilz
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