| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2018-03-26 | Add functions to help handle github login | Muriithi Frederick Muriuki | |
| * Add functions to help with the github OAuth2 login process | |||
| 2018-03-26 | Add elasticsearch_tools module | Muriithi Frederick Muriuki | |
| * Collect variables and functions for using the elasticsearch system in a separate module. | |||
| 2018-03-26 | Add client_id and client_secret configurations | Muriithi Frederick Muriuki | |
| * Provide the OAuth2 client_id and client_secret values in configuration variables. | |||
| 2018-03-26 | Add template elements for OAuth login | Muriithi Frederick Muriuki | |
| * Add html elements that will be used to prompt users to login with either GitHub or ORCID. | |||
| 2018-03-26 | Add configuration variables for external services | Muriithi Frederick Muriuki | |
| * Add configuration variables for GitHub and ORCID which will be used by the system to allow users to login. | |||
| 2018-03-16 | Just undoing tabulator changes so I can push other changes | zsloan | |
| 2018-03-15 | Changed appearance of mapping and correlation options on trait page | zsloan | |
| Fixed issue where changed sample values were not passed to qtlreaper mapping ("Interval Mapping") Loading factors and their plot are hidden in situations where there's some error with calculating principal components Added GEMMA description and changed order of descriptions for mapping options on trait page | |||
| 2018-03-02 | Added option to display selected covariates for GEMMA mapping | zsloan | |
| Changed layout/appearance of mapping options Partially fixed issue with deleting collections Changes to correlation table still in progress; having trouble getting tabulator to load JSON | |||
| 2018-02-26 | Merge /home/lei/gene into testing | zsloan | |
| 2018-02-26 | Committing some in-progress changes related to loading correlation page from ↵ | zsloan | |
| JSON | |||
| 2018-02-23 | update corr scatterplot interface | Lei Yan | |
| 2018-02-14 | Added empty collection error page to git, since it wasn't on production | zsloan | |
| 2018-02-13 | Resolved conflict | zsloan | |
| 2018-02-13 | Just committing very minor change to correlation table so I can pull other ↵ | zsloan | |
| changes | |||
| 2018-02-13 | @zsloan: we should introduce full parameter checking and sensible defaults ↵ | Pjotr Prins | |
| for every page we work on. It will help bug tracking. Probably fixes #279 | |||
| 2018-02-12 | Changed code parsing GEMMA output to fix issue where it wasn't getting the ↵ | zsloan | |
| correct p-values | |||
| 2018-02-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2018-02-12 | Quick parallel correlation should work, though I'm not sure why the code ↵ | zsloan | |
| suddenly decided to start running it when it wasn't in the past. Switched correlation table to tabulator | |||
| 2018-02-10 | Fixing GEMMA LOCO | Pjotr Prins | |
| 2018-02-10 | Fixed finding PATHs - one return statement! | Pjotr Prins | |
| 2018-02-10 | Check for bimbam path and bail out if it is missing | Pjotr Prins | |
| 2018-01-30 | gunicorn dev and prod modes added | Pjotr Prins | |
| 2018-01-29 | Gunicorn works | Pjotr Prins | |
| 2018-01-29 | startup script: adapting for gunicorn | Pjotr Prins | |
| 2018-01-24 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2018-01-24 | Added links for markers in mapping results table when genotypes exist in DB | zsloan | |
| Added more info to trait details for phenotype traits Changed order of mapping methods Fixed layout of mapping loading screen to hopefully be centered on different screen sizes Improved layout of some elements in mapping results page | |||
| 2018-01-04 | Merge pull request #270 from pjotrp/testing | zsloan | |
| Merge some older commits | |||
| 2017-12-20 | Added submit_bnw even though it isn't working yet, just so views.py doesn't ↵ | zsloan | |
| throw an error | |||
| 2017-12-20 | Fixed issue that caused Mb ticks to get out of alignment for mapping figure | zsloan | |
| 2017-12-20 | Fixed the way PLINK outputs phenotype files (though there's still some ↵ | zsloan | |
| problem preventing it from working) Added some code related to new plotly probability plot, though it's commented out until it looks how I want it to Added some code for adding the BNW link to GN2, though it's not working yet Updated dataset menu structure JSON file | |||
| 2017-12-20 | tools: find path for JS and gemma_wrapper | Pjotr Prins | |
| 2017-12-20 | Bring in some earlier work - mostly documentation and startup handling | Pjotr Prins | |
| 2017-12-06 | Fixed drop-down group order | zsloan | |
| 2017-12-04 | Fixed drop-down scripts to more appropriately deal with BXD300 groups ↵ | zsloan | |
| (though there's still a minor issue with a few datasets) Added some header data to mapping output file Fixed links in Network Group nodes/edges | |||
| 2017-11-22 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2017-11-22 | Added option to export csv of full mapping results | zsloan | |
| 2017-11-21 | Merge pull request #258 from lyan6/master | zsloan | |
| improved scatter plots | |||
| 2017-11-17 | Fixed issue that caused GEMMA LOCO to not work on production | zsloan | |
| 2017-11-06 | Replaced Histogram and Bar Chart with Plotly version and added new Box Plot ↵ | zsloan | |
| with Plotly GEMMA now has option to select genotypes Updated dataset select dropdowns to be ordered correctly Fixed dataset select dropdowns for correlations to not show confidential datasets Added Skewness and Kurtosis to Basic Statistics table Fixed Verify and RNA-seq buttons on trait page Temporarily hardcoded Reference page until we get it to link with database | |||
| 2017-10-02 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 | Lei Yan | |
| 2017-10-02 | save as svg button work | Lei Yan | |
| 2017-09-22 | Fixed issue that caused covariates to not work for certain data set groups | zsloan | |
| 2017-09-22 | Fixed issue that caused LOCO to not work when remapping or using single ↵ | zsloan | |
| chromosome view | |||
| 2017-09-21 | LOCO should work with GEMMA (when BIMBAM available), though I still need to ↵ | zsloan | |
| do more testing | |||
| 2017-09-14 | Committing current progress towards implementing LOCO for GEMMA, not done yet | zsloan | |
| 2017-09-13 | update Correlation Scatterplot format | Lei Yan | |
| 2017-09-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 | Lei Yan | |
| 2017-09-12 | change corr_scatterplot precision format | Lei Yan | |
| 2017-09-07 | Updated show trait page to correctly show GEMMA options for certain data sets | zsloan | |
| 2017-09-07 | Added the script to convert bimbam to kinship matrices | zsloan | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |