Age | Commit message (Collapse) | Author |
|
Later we will want to run all mapping methods outside of the web server, though
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Fix global search "il6" for "Internal Server Error". Add single quote…
|
|
|
|
|
|
MySQL query.
|
|
|
|
|
|
|
|
|
|
|
|
not assume the item exists.
ERROR:wqflask:Exception on /marker_regression [POST]
Traceback (most recent call last):
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1817, in wsgi_app
response = self.full_dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1477, in full_dispatch_request
rv = self.handle_user_exception(e)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1381, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1475, in full_dispatch_request
rv = self.dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1461, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/views.py", line 460, in marker_regression_page
template_vars = marker_regression.MarkerRegression(start_vars, temp_uuid)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/marker_regression/marker_regression.py", line 74, in __init__
value = start_vars['value:' + sample]
KeyError: 'value:BXD80'
|
|
|
|
|
|
and uncommented simplejson import
Added "Reset" option to network graph that returns all the nodes/edges
Made the visualization options area in the network graph a little wider
|
|
|
|
|
|
settings
Run with
./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
|
|
|
|
correlation slider. The first only displays the edges for the specified trait/node, the second changes layout, and the third hides nodes/edges with abs(correlation) less than the slider's value
Changed/added a couple node/edge attributes for network graph
Updated dataset menu structure json file to include the human RETINA data set
Added css file for network graph page (specifically to make the appearance of the options resemble the RETINA website's)
|
|
|
|
GN2 and third party links when clicking a node, view scatterplot when clicking an edge, and edges appearance varies based upon correlation
Fixed issue that caused error with correlation page
|
|
Removed unnecessary datatables javascript code that referred to basic stats table
|
|
|
|
confidential phenotype traits in search results and trait pages
Fixed table style for mapping results and interval analyst tables and added additive/dominance effect columns to the former
Fixed mapping figure X-axis to accurately label Centimorgans vs Megabases (previously it would always say Megabases)
Removed the "Sequence Site" marker from mapping result figure when mapping with genetics (centimorgans) scale
Removed some unused javascript libary imports from search/global search pages
|
|
|
|
global search results
|
|
tools (correlation matrix, wgcna, etc)
To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url
Duplicate traits can no longer by added to collections
Fixed the digits for a few table columns in collection (additive effect, etc).
|
|
implemented yet
Added padding to header text of Basic Statistics table
|
|
Decreased collections/list table width
|
|
anonymous collections as user collections
|
|
mice/rats
Fixed broken image link in Interval Analyst table for rats
Small change to column width of gene global search
|
|
seems to be related to some strains being renamed in the genofiles
Added a message to the Add to Collection page warning users that anonymous collections will only be stored for 5 days
Updated genofiles
|
|
caused single chromosome mapping to not work
Disabled bootstrap for mapping unil issue causing wrong results is fixed
Added header to first column of basic statistics table and increased width to avoid rows spilling over to second line
|
|
|
|
development
Conflicts:
wqflask/base/data_set.py
|
|
collections
|
|
|
|
Can now remove traits from collections and add to existing collections
Fixed a few other minor collection bugs
|
|
|