Age | Commit message (Collapse) | Author | |
---|---|---|---|
2015-10-07 | Passing more information calculated by WGCNA to the results page | DannyArends | |
2015-10-07 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into ↵ | DannyArends | |
WGCNAintegration | |||
2015-10-05 | Correlation Matrix page is partially complete + fixed some issues with ↵ | zsloan | |
column resizing on global search pages | |||
2015-09-27 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into ↵ | DannyArends | |
WGCNAintegration | |||
2015-09-25 | Forgot to add the table-striped class to the basic stats table to make its ↵ | zsloan | |
style the same as other tables | |||
2015-09-25 | Made the basic statistics table look nicer and got rid of the foo column if ↵ | zsloan | |
only one sample group | |||
2015-09-24 | Location range feature should work for correlations now, though the ↵ | zsloan | |
interface appearance needs to be improved | |||
2015-09-20 | Using the webqtlConfig.TMPDIR constant and the webqtlUtil.genRandStr function | DannyArends | |
2015-09-20 | Now able to run WGCNA analysis on a user defined collection, still lots of todos | DannyArends | |
2015-09-20 | Display the results from WGCNA updated | DannyArends | |
2015-09-20 | Transfering data from python to R for WGCNA analysis using Rpy2 | DannyArends | |
2015-09-20 | Updating the WGCNA setup and results templates | DannyArends | |
2015-09-19 | Adding a todo list to the code, for issue: genenetwork/genenetwork2#119 | DannyArends | |
2015-09-19 | Adding views and passing the trait_list information from setup to results | DannyArends | |
2015-09-19 | 2 templates, 1 for user input and 1 for showing the results | DannyArends | |
2015-09-19 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into ↵ | DannyArends | |
WGCNAintegration | |||
2015-09-18 | Filter by min expression and r range now works, though interface for slider ↵ | zsloan | |
could be improved | |||
2015-09-17 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into ↵ | DannyArends | |
WGCNAintegration Staying up2date | |||
2015-09-11 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
2015-09-11 | Fixed issue causing error if trying to use Heatmap or Correlation Matrix ↵ | zsloan | |
with an empty collection Fixed tables in correlation page and trait page to separate index column and checkbox column | |||
2015-09-11 | Removing import pandas from code | DannyArends | |
2015-09-11 | More fiddling with templates | DannyArends | |
2015-09-11 | Figured out how those flask templates work, analysis broken down into 3 ↵ | DannyArends | |
parts, WGCNA R package installs and loads succesfully in the gn2-docker image | |||
2015-09-11 | Some more work on the analysis | DannyArends | |
2015-09-11 | Start R and load the WGCNA library in wgcna_analysis.py | DannyArends | |
2015-09-11 | Adding empty WGCNA class, and creating it in views.py | DannyArends | |
2015-09-11 | Seems I always turn around the G and C | DannyArends | |
2015-09-11 | Adding a custom wgcna route in gn2, and adding a button to the ↵ | DannyArends | |
collections/view.html | |||
2015-09-11 | Comment out some excessive stdout spam | DannyArends | |
2015-09-11 | Adding an empty HTML results template for WCGNA | DannyArends | |
2015-09-10 | Merge pull request #117 from lyan6/master | zsloan | |
Fixed "TypeError: float argument required, not NoneType" about mean. | |||
2015-09-10 | Fixed "TypeError: float argument required, not NoneType" about mean. | Lei Yan | |
Committer: Lei Yan <lei@penguin.uthsc.edu> On branch master | |||
2015-09-09 | Issue genenetwork/genenetwork2#113, forgot to uncomment the secret_key | DannyArends | |
2015-09-09 | Fix for issue genenetwork/genenetwork2#113, I added the SESSION_TYPE and ↵ | DannyArends | |
SECRET_KEY to the default config, this should be overwritten in my_settings.py | |||
2015-09-08 | Fixed covariates with R/qtl mapping | zsloan | |
A few minor GUI changes on trait page (button names, locations, etc) Fixed "pressing enter to search" on index page | |||
2015-09-01 | Fixed issue that caused R/qtl mapping to not work | zsloan | |
Removed bootstrap and additive effect options until I can get them working correctly | |||
2015-09-01 | Fixed color by trait feature | zsloan | |
Added Y axis line to bar histogram Added link to GN1 in menu bar Fixed mapping results table to look more like other tables (though still has initial issue with header being too short) Added Tissue to global search results and trait page | |||
2015-08-26 | Fixed issue with colums for the gene global search (still need to change for ↵ | zsloan | |
phenotype) Fixed issue where LRS and LOD are sometimes labeled incorrectly Changed the header of the trait page Added link to GN1 in header Fixxed an issue that made permutations not work with pylmm Fixed "sign in" button when creating a collection while not logged in | |||
2015-08-14 | Added csv download button to search result table; still need to add to other | zsloan | |
tables and later attach its functionality to the existing Download Table button Fixed an issue where rows wouldn't uncheck with backspacing in Select Top text area; the last commit just fixed the highlighting, not the checkboxes Some changes in progress towards trying to fix the additive effect issue; the problem is that the lod_chart.js code writes each chromosome as one d3 path, so I can't change the color for individual segments within that path. I'll have to completely change the way the path is drawn for the additive effect | |||
2015-08-12 | Made Select Top function more intuitively and changed the text box length | zsloan | |
2015-08-12 | Fixed global and regular search so that resizing/reordering columns works ↵ | zsloan | |
for all of them, among other minor changes | |||
2015-08-11 | Highlighting works for all trait selection options (select all, invert, ↵ | zsloan | |
select top) Search table and Select Top options added to global and regular search pages | |||
2015-08-06 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2015-08-06 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2015-08-06 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2015-08-04 | Fixed additive effect for lodchart | zsloan | |
Made some more changes/improvements to various tables throughout the site | |||
2015-07-31 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2015-07-29 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
On branch master | |||
2015-07-28 | Merge https://github.com/genenetwork/genenetwork2 | Lei Yan | |
2015-07-27 | Committing a few more changes to tables before pulling Lei's global search ↵ | zsloan | |
updates |