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2018-04-15Fix issue with indentationMuriithi Frederick Muriuki
* Ensure the return is at the correct indentation level so that it is executed correctly.
2018-04-13Check email provided on forgot passwordMuriithi Frederick Muriuki
* Ensure that the user actually provides an email address when they try to use the forgot password feature.
2018-04-13Merge remote-tracking branch 'pjotrp/testing' into testingMuriithi Frederick Muriuki
2018-04-12README and docsPjotr Prins
2018-04-11Added tissue correlation p value to correlation page results, since it was ↵zsloan
missing before Removed a bunch of unused coded from all correlation-related files and the ctl analysis code
2018-04-11Merge remote-tracking branch 'pjotrp/testing' into testingMuriithi Frederick Muriuki
2018-04-10Most code in webqtlUtil.py has been removed. There is so little left that ↵zsloan
the remaining could should be migrated to the files that use them at some point. Some of this code was in the correlation code but not being used, so it wss removed from there as well.
2018-04-09Removed svg.py, which I know isn't used, and webqtlFormData, which I'm ↵zsloan
pretty sure also isn't used any more. Also removed some other unused code from the files listed
2018-04-09Fixed issue that caused and error for certain types of mapping due to ↵zsloan
variable not being initialized Removed a bunch of unused statistical functions from Plot.py and webqtlUtil.py. I figure that if we ever need them again, there's probably some third party library that includes them. Also removed unused file AJAX_table.py and other unused code from several other files
2018-04-09Removed unused code from get_select_dataset.py and get_group_samplelists.py ↵zsloan
scripts
2018-04-09Removed unused code from convert_geno_to_bimbam.py and corestats.pyzsloan
2018-04-09Removed the basicStatistics directory/contents because nothing there was ↵zsloan
being used except corestats, which I moved to utility Removed box plot code from Plot.py since we no longer use it either
2018-04-09Removed unused code from webqtlFormData.pyzsloan
2018-04-09Removed some unused code in webqtlConfig; some might need to be added back ↵zsloan
in later when other third party links are implemented on the trait/collection pages
2018-04-07Dear @zsloan,Pjotr Prins
This patch removes TableTools. I don't think we use it. I have compared the look and feel of below pages and I see no difference. If that is correct we can simply ditch it by merging this PR. Note that if we are using such functionality this package is considered obsolete by the authors. According to https://datatables.net/extensions/tabletools/: This extension has now been retired and has been replaced by the Buttons and Select extensions. The documentation is retained for legacy reference only. New projects should use Buttons and Select in preference to TableTools. Moving Tabletools CSS --- a/wqflask/wqflask/static/packages/TableTools/media/css/TableTools.css +++ b/wqflask/wqflask/static/packages/TableTools/media/css/TableTools.css @@ -319,3 +319,8 @@ div.DTTT_collection a.DTTT_button { line-height: 20px; } +.no-sort::after { display: none!important; } +.no-sort { pointer-events: none!important; + cursor: default!important; +} + wqflask/wqflask/templates/correlation_matrix.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> wqflask/wqflask/templates/collections/list.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> wqflask/wqflask/templates/search_error.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> wqflask/wqflask/templates/corr_scatterplot.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> wqflask/wqflask/templates/pair_scan_results.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
2018-04-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2018-04-06Mapping figure output now gives more accurate informationzsloan
Committing partway through removing a bunch of unused code/files just in case something necessary gets removed
2018-04-06Removing use ValidationPlugin. See ↵Pjotr Prins
https://github.com/genenetwork/genenetwork2/issues/310
2018-04-06See #308.Pjotr Prins
Cytoscape and related is now loaded from Guix. Use the latest GN2_PROFILE.
2018-04-05Removed cytoscape - it is in GuixPjotr Prins
2018-04-05Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵Muriithi Frederick Muriuki
testing
2018-04-04Changed bar chart y axis range to avoid situation where all variation is ↵zsloan
clustered at the top or bottom
2018-04-04Merge pull request #303 from pjotrp/testingzsloan
Minor edits and document on ES
2018-04-04Authentication: comments addedPjotr Prins
2018-04-04ES: docPjotr Prins
2018-04-04Switched to plotly probability plotzsloan
Removed a variety of scripts that weren't being used on the trait page
2018-04-02Fixed link for staging serverzsloan
2018-04-02Fixed error that caused server to not start with new user codezsloan
2018-04-02Merge pull request #301 from pjotrp/testing-rm-bloatzsloan
Testing rm bloat (jqplot and ckeditor)
2018-04-02Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2018-04-02Just added link to staging branch to header barzsloan
2018-04-02Config files are store in https://github.com/genenetwork/gn-deploy-servers repoPjotr Prins
2018-04-02Remove filePjotr Prins
2018-04-02User manager no longer uses SQLPjotr Prins
2018-04-02js: rm ckeditor - need to replacePjotr Prins
2018-04-02js: removed jqplotPjotr Prins
2018-04-02user_session add outputPjotr Prins
2018-03-31Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵Muriithi Frederick Muriuki
testing * Fix conflicts
2018-03-30Collections: use logging instead of print (@zsloan)Pjotr Prins
2018-03-30Fixes related to E-mail forgotten passwordPjotr Prins
2018-03-30Fixes related to E-mail forgotten passwordPjotr Prins
2018-03-30Fixes forgotten password error, see #257Pjotr Prins
2018-03-29Can now add markers to collection from mapping results pagezsloan
2018-03-29Resolved conflict in views.pyzsloan
2018-03-29Fixed box plots and got them to update with changed sample datazsloan
Removed fast correlation option because it doesn't work well with gunicorn Changed the type of logger from error to debug when logging which page is being visited in views.py
2018-03-29Fixed gsearch blowout https://github.com/genenetwork/genenetwork2/issues/295Pjotr Prins
2018-03-29Type checking in its own filePjotr Prins
2018-03-29Search: improved regex and some debug infoPjotr Prins
2018-03-29Disable caching of search errorsPjotr Prins
2018-03-29Checking search error terms with regexPjotr Prins