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2020-11-26add reference markdown and github buttonAlexander Kabui
2020-11-25Added actual code for coloring manhattan plot differently to ↵zsloan
display_mapping_results.py
2020-11-25Added code for passing around form parameters related to manhattan plot ↵zsloan
coloration to run_mapping.py and views.py
2020-11-25Added form options for changing manhattan plot color scheme + added ↵zsloan
necessary imports and hidden inputs
2020-11-25Removed an unused console.timeEnd in the JSzsloan
2020-11-25Substituted CDN link to the font-awesome CSS with the local guix profile linkzsloan
2020-11-25Merge pull request #489 from Alexanderlacuna/fix-referencesBonfaceKilz
Fix broken UI
2020-11-24- Fixed the "Block by Attribute Value" featurezsloan
- Changed the "Block by Attribute Value" feature and the "Filter by Value" feature to only work on columns that are numeric or have a small number of distinct values (respectively)
2020-11-24Added JS for Filter Samples by Value feature and removed a few unused lineszsloan
2020-11-24Added html/css for new "Filter Samples by Value" feature and changed a ↵zsloan
couple class names to make more sense for being shared between both this feature and "Block Samples by Index"
2020-11-24solve issues to do with decoding in python3Alexander Kabui
2020-11-23Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-23Changed correlation matrix cells for traits with zero shared samples to ↵zsloan
instead say N/A and be a shade of grey
2020-11-20Replace mockobject with dataclassesBonfaceKilz
* wqflask/tests/unit/wqflask/test_markdown_routes.py (MockRequests404): Use dataclasses. (MockRequests200): Ditto.
2020-11-20Update tests to use new gn2-docs urlBonfaceKilz
2020-11-20Replace mistunes with markdown libraryBonfaceKilz
* wqflask/wqflask/markdown_routes.py (render_markdown): Use markdown library instead of mistunes.
2020-11-20Point url for fetching md content to gn-docs repoBonfaceKilz
* wqflask/wqflask/markdown_routes.py (render_markdown): Use gn-docs URL to fetch markdown content.
2020-11-20Remove glossary markdown templateBonfaceKilz
* wqflask/wqflask/static/markdown/: Delete folder. Files moved to https://github.com/genenetwork/gn-docs
2020-11-19Removed lines that check that all traits are part of the same group,zsloan
since it might be the case in the future that different groups still share sample names (and it's not really necessary since we check how many samples are shraed between each individual pair of traits)
2020-11-18Fixed issue where the cofactor trait descriptions didn't work correctlyzsloan
for genotype/snp cofactors (the code previously only accounted for probeset/phenotype cofactors, so it was treating genotypes/snps like phenotype traits)
2020-11-18Changed default Low/High colors for the correlation scatterplot cofactorzsloan
coloring to Blue/Red respectively (was originally Light Grey/Black)
2020-11-18Added some jquery closing the "Add To Collection" colorbox window afterzsloan
its form is submitted
2020-11-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-18Fixed issue that was causing scatterplot cofactors to not work if thezsloan
cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits)
2020-11-18Removed console.log and commented out statements fromzsloan
get_traits_from_collection.js
2020-11-18Fixed "back_to_collections" function in get_traits_from_collection.jszsloan
(function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot)
2020-11-18Merge pull request #481 from Alexanderlacuna/test-SampleListBonfaceKilz
Test sample list
2020-11-18use f strings in marker_regression/qtlreaper_mapping.pyAlexanderlacuna
2020-11-18use f strings in marker_regression/plink_mappingAlexanderlacuna
2020-11-17use better function namesAlexanderlacuna
2020-11-16update refactored natural_sort function in show_trait/SampleList.pyAlexanderlacuna
2020-11-13Switched to using f-strings instead of the older method of stringzsloan
formatting
2020-11-13Switched to using boolean casting to check if various trait attributeszsloan
exist
2020-11-13- Added Show/Hide Columns options and included the trait_list.css filezsloan
which including styling for said options - Changed some column widths to avoid text wrapping
2020-11-13Added some css to trait_list.css restyling the "show/hide column"zsloan
buttons when they're active. Not really pleased with the result, but styling a button to look depressed is a pain
2020-11-13Changed some if/else statements to just initializing the variables + thezsloan
if statement and fixed "lrs_location" to "location" for target genotypes
2020-11-13Added cdn imports for fontawesome to correlation page and changedzsloan
superscript i's to fontawesome icons for the glossary links in column headers
2020-11-13Replaced superscript i's for glossary links in search result tablezsloan
headers with fontawesome icons
2020-11-12Import fontawesome css/js and used its info character for glossary links on ↵zsloan
search results page
2020-11-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵zsloan
feature/corr_table_changes
2020-11-12Substituted -log(p) with -logP as mentioned in Rob's e-mailzsloan
2020-11-12Show Mb positions to 6 decimal places in mapping results tablezsloan
2020-11-12refactor codeAlexanderlacuna
2020-11-12add pep8 fixes in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-12add test for parse gemma output in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-12modify tests for marker regressionAlexanderlacuna
2020-11-11add tests for marker_regression/rqtl_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/qtlreaper_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/run_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/gemma_mapping.pyAlexanderlacuna
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