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2015-03-24Merge branch 'master' of github.com:DannyArends/genenetwork2zsloan
2015-03-24Added pair scan to the marker_regression_page viewzsloan
2015-03-24Added back css directory/fileszsloan
2015-03-24Change back port location and home directory location; this should be in ↵zsloan
external settings
2015-03-24Updates to the templateszsloan
2015-03-24Code updates to marker regressionzsloan
2015-03-24Removing the node.js + v8 code from the repository (this should be also ↵DannyArends
removed in the history), this should not be here since its a dependency not code we want to maintain ourselves
2015-03-23Minor update to get the pylmm code working on my instance of penguinDannyArends
2015-03-23Updates to make GN2 work on my version of penguin (ports, and paths)DannyArends
2015-03-23Adding my path to sys.path in pylmmDannyArends
2015-03-23Merge branch 'master' of github.com:pjotrp/genenetwork2DannyArends
2015-03-20Merge branch 'master' of https://github.com/zsloan/genenetwork2Pjotr Prins
2015-03-19Removing mapmethod mapmodel from the coffeescriptDannyArends
2015-03-19testing some moreDannyArends
2015-03-19Print initial start_varsDannyArends
2015-03-19Print wantedDannyArends
2015-03-19Print for testingDannyArends
2015-03-19Freaking comma ???DannyArends
2015-03-19Testing againDannyArends
2015-03-19Updating the coffee scriptDannyArends
2015-03-19Strungling with passing parametersDannyArends
2015-03-19This is getting more and more annoyingDannyArends
2015-03-19This front to back passing of parameters is just weirdDannyArends
2015-03-19Name method is already takenDannyArends
2015-03-19try last time, something is really weird between the front and the backendDannyArends
2015-03-19Test/DebugDannyArends
2015-03-19Adding the new options to views.pyDannyArends
2015-03-19Minor updates to the marker regression code for R/qtl, layout mostlyDannyArends
2015-03-19Receiving the chosen method and model in the python backend codeDannyArends
2015-03-19Adding the method and model option in the userinterfaceDannyArends
2015-03-19Adding the method and model parameters of R/qtl so that we can have the user ↵DannyArends
choose to use non-parametric QTL mapping, binary phenotypes, etc
2015-03-18Begun adding pair scan option, fixed bug if no closest markers foundzsloan
2015-03-18Adding a fix to purge non-existing markers as covariates for the R/qtl analysiszsloan
2015-03-18Merge branch 'pylmm0002'Pjotr Prins
Conflicts: wqflask/wqflask/my_pylmm/pyLMM/lmm.py
2015-03-18Some more minor code/comment updates, making code a little shorterDannyArends
2015-03-18Cleaning up some of the code, updating output and adding/changing commentsDannyArends
2015-03-17Added r function for setting genotypes and generating the cross filezsloan
2015-03-17Moved print statement for non-humans only inside if statementzsloan
2015-03-17Merge branch 'master' of github.com:pjotrp/genenetwork2 into pjotr_testzsloan
2015-03-17Added permutations and cleaned code for rqtlzsloan
2015-03-17Merge branch 'master' of https://github.com/zsloan/genenetwork2 into pylmm0001Pjotr Prins
2015-03-17Converting an absolute path to a relative pathDannyArends
2015-03-17Added files for bootstrap icons and scatter-plot css fileZachary Sloan
2015-03-17Improved rqtl codeZachary Sloan
2015-03-17Moved scatter-plot to the right of options instead of belowZachary Sloan
2015-03-17Moved setting of geno variable into non-humanZachary Sloan
2015-03-17Release 0.50-gn2-pre1Pjotr Prins
2015-03-17GWAS: sort results so we always get the same listPjotr Prins
2015-03-17README: Started release information and versioning of modulePjotr Prins
2015-03-17runlmm: Explicit handling of missing phenotypesPjotr Prins
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