| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-11-09 | mock logger in marker_regression/gemma_mapping.py | Alexanderlacuna | |
| 2020-11-09 | add test for run_gemma function in marker_regression/gemma_mapping.py | Alexanderlacuna | |
| 2020-11-09 | refactor marker_regression/gemma-mapping.py run-gemma function to avoid ↵ | Alexanderlacuna | |
| Index Error | |||
| 2020-11-08 | add tests for marker_regression/plink_mapping.py | Alexanderlacuna | |
| 2020-11-08 | add tests for marker_regression/gemma_mapping | Alexanderlacuna | |
| 2020-11-08 | Change defaultline argument in the build_line_list from None to empty string | Alexanderlacuna | |
| 2020-11-06 | Removed the page selection from the top of the table because it created an ↵ | zsloan | |
| awkward gap between the column show/hide buttons and the table, and this table will be changed to use Scroller instead of paging soon regardless | |||
| 2020-11-06 | Changed the show/hide column buttons to use DataTables API + a few other ↵ | zsloan | |
| changes (for some reason none of my changes could be pushed from one of my local branches to origin/testing, so they're combined in this commit) - Fixed a couple column header glossary links to point to GN1 - Added trait_list.css for styling a couple elements common to similar pages (like correlations or view collection) | |||
| 2020-11-06 | Added min-width for the divs containing the analysis tools and table ↵ | zsloan | |
| options, since they would look weird if the window shrunk below a certain width Also made some indentation more consistent | |||
| 2020-11-06 | Added new css file for pages that have trait list tables (not sure what else ↵ | zsloan | |
| to call them, but pages like search results, view collection, and correlation results) | |||
| 2020-11-06 | Increased the min-width for the show_trait page container div for all the ↵ | zsloan | |
| accordion sections, since previously it could get too narrow and cause text to extend beyong the borders of each accordion area | |||
| 2020-11-06 | After I changed some class names in the trait page to use - instead of _ (to ↵ | zsloan | |
| keep naming consistent) I forgot to change the references in show_trait_mapping_tools.js (which broke the functionality of clicking a tab doing mapping) | |||
| 2020-11-06 | remove whitespace | Alexanderlacuna | |
| 2020-11-06 | modify natural_sort and return list to avoid having side effect | Alexanderlacuna | |
| 2020-11-06 | modify tests to for changes in the natural sort function | Alexanderlacuna | |
| 2020-11-05 | Converted correlation table for ProbeSet target datasets to use the JSON ↵ | zsloan | |
| input and removed the unused table html | |||
| 2020-11-05 | Added some additional necessary fields to generate_corr_json in ↵ | zsloan | |
| show_corr_results.py | |||
| 2020-11-06 | fix typo | Alexanderlacuna | |
| 2020-11-05 | Removed html from generate_corr_json since that will be done by the column ↵ | zsloan | |
| definitions after passing the data to DataTables as JSON | |||
| 2020-11-05 | Imported Scroller and used it with correlation page table | zsloan | |
| 2020-11-05 | remove duplicates | Alexanderlacuna | |
| 2020-11-05 | add test for samplelist and show_trait | Alexanderlacuna | |
| 2020-11-04 | Changed numeric-html sorting for the Tissue/Lit r columns to ↵ | zsloan | |
| natural-minus-na so it deals with the "--" values * wqflask/wqflask/templates/correlation_page.html - Replaced numeric-html sorting with natural-minus-na for the lit/tissue r columns | |||
| 2020-11-04 | Use new glossary link from glossary_blueprint in html templates | BonfaceKilz | |
| 2020-11-04 | Add missing image | BonfaceKilz | |
| 2020-11-04 | Add link markers to elements which are referenced from elsewhere | BonfaceKilz | |
| 2020-11-04 | Update test_markdown_routes | BonfaceKilz | |
| * wqflask/tests/unit/wqflask/test_markdown_routes.py (test_render_markdown_when_fetching_locally): Fix failing test. | |||
| 2020-11-04 | Add an edit link button to glossary page | BonfaceKilz | |
| 2020-11-04 | Wrap rendered content in div container | BonfaceKilz | |
| 2020-11-04 | Update glossary markdown file | BonfaceKilz | |
| 2020-11-04 | Merge pull request #475 from Alexanderlacuna/test-showtrait | BonfaceKilz | |
| Add more tests for show trait module | |||
| 2020-11-04 | correct a typo | Alexanderlacuna | |
| 2020-11-04 | remove extra whitespace | Alexanderlacuna | |
| 2020-11-04 | remove whitespace in line 119-120 | Alexanderlacuna | |
| 2020-11-04 | remove whitespace | Alexanderlacuna | |
| 2020-11-04 | remove whitespace and assertIs | Alexanderlacuna | |
| 2020-11-03 | Merge pull request #479 from zsloan/bug/haplotype_analyst_error_fix | zsloan | |
| Bug/haplotype analyst error fix | |||
| 2020-11-03 | Changed the syntax for the "sort" function in the docstring of GeneralObject ↵ | zsloan | |
| to be compatible with Python 3 syntax * wqflask/base/GeneralObject.py - edited docstring to be correct for Python 3 | |||
| 2020-11-03 | Fixed a sort used when doing the haplotype analysis to be compatible with ↵ | zsloan | |
| Python 3 * wqflask/wqflask/marker_regression/display_mapping_results.py - The arguments for sort are different in Python 3, so it was changed to be compatible | |||
| 2020-11-03 | Fix false-positive tests | BonfaceKilz | |
| * wqflask/tests/unit/wqflask/test_markdown_routes.py: (MockRequests404): Pass self in all properties. (MockRequests200): Ditto. (test_render_markdown): Rename to test_render_markdown_when_fetching_locally. (test_render_markdown_when_fetching_remotely): New test. | |||
| 2020-11-03 | Merge pull request #478 from zsloan/loading_page_n_fix | zsloan | |
| Joined sample names in primary_samples and all_samples with commas be… | |||
| 2020-11-03 | Joined sample names in primary_samples and all_samples with commas because ↵ | zsloan | |
| this list was being split to get the N of samples; not sure why this was working before * wqflask/wqflask/show_trait/show_trait.py primary_samples and all_samples passed as hidden form inputs now have names split by commas so they can be counted correctly when displaying the N on the mapping loading screen | |||
| 2020-11-03 | Delete file | BonfaceKilz | |
| * wqflask/tests/integration/test_glossary.py: Delete it. Earlier renamed to test_markdown_routes. | |||
| 2020-11-03 | Add basic tests for rendering_markdown | BonfaceKilz | |
| * wqflask/tests/unit/wqflask/test_markdown_routes.py: New tests. | |||
| 2020-11-03 | Add basic structure for "/glossary" routes test | BonfaceKilz | |
| 2020-11-03 | Move logic for fetching md files to it's own function | BonfaceKilz | |
| * wqflask/wqflask/markdown_routes.py (render_markdown): New function. (glossary): use render_markdown function. | |||
| 2020-11-03 | Add simple md content in glossary.md | BonfaceKilz | |
| 2020-11-03 | Update glossary template with markdown content | BonfaceKilz | |
| 2020-11-03 | Rename glossary.py to markdown_routes.py | BonfaceKilz | |
| Evary page with markdown content will have routes added in markdown_routes.py * markdown_routes.py: New file. * wqflask/wqflask/glossary.py: Delete it. * wqflask/wqflask/__init__.py: Update import. | |||
| 2020-11-03 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵ | Alexanderlacuna | |
| test-showtrait | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |